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Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
[Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error fo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350201/ https://www.ncbi.nlm.nih.gov/pubmed/30604619 http://dx.doi.org/10.1021/acssensors.8b01419 |
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author | Lin, Xingyu Huang, Xiao Urmann, Katharina Xie, Xing Hoffmann, Michael R. |
author_facet | Lin, Xingyu Huang, Xiao Urmann, Katharina Xie, Xing Hoffmann, Michael R. |
author_sort | Lin, Xingyu |
collection | PubMed |
description | [Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error for digital LAMP on these membranes was analyzed, using a combination of Random Distribution Model and Multivolume Theory. A facile peel-off process was developed for effective droplet formation on the commercial track-etched polycarbonate (PCTE) membrane. Each pore functions as an individual nanoreactor for single DNA amplification. Absolute quantification of bacteria genomic DNA was realized with a dynamic range from 11 to 1.1 × 10(5) copies/μL. One-step digital RT-LAMP was also successfully performed on the membrane for the quantification of MS2 virus in wastewater. With the introduction of new probes, the positive pores can be easily distinguished from negative ones with 100 times difference in fluorescence intensities. Finally, the cost of a disposable membrane is less than $0.10/piece, which, to the best of our knowledge, is the most inexpensive way to perform digital LAMP. The membrane system offers opportunities for point-of-care users or common laboratories to perform digital quantification, single cell analysis, or other bioassays in an inexpensive, flexible, and simplified way. |
format | Online Article Text |
id | pubmed-6350201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-63502012019-01-31 Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane Lin, Xingyu Huang, Xiao Urmann, Katharina Xie, Xing Hoffmann, Michael R. ACS Sens [Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error for digital LAMP on these membranes was analyzed, using a combination of Random Distribution Model and Multivolume Theory. A facile peel-off process was developed for effective droplet formation on the commercial track-etched polycarbonate (PCTE) membrane. Each pore functions as an individual nanoreactor for single DNA amplification. Absolute quantification of bacteria genomic DNA was realized with a dynamic range from 11 to 1.1 × 10(5) copies/μL. One-step digital RT-LAMP was also successfully performed on the membrane for the quantification of MS2 virus in wastewater. With the introduction of new probes, the positive pores can be easily distinguished from negative ones with 100 times difference in fluorescence intensities. Finally, the cost of a disposable membrane is less than $0.10/piece, which, to the best of our knowledge, is the most inexpensive way to perform digital LAMP. The membrane system offers opportunities for point-of-care users or common laboratories to perform digital quantification, single cell analysis, or other bioassays in an inexpensive, flexible, and simplified way. American Chemical Society 2019-01-03 2019-01-25 /pmc/articles/PMC6350201/ /pubmed/30604619 http://dx.doi.org/10.1021/acssensors.8b01419 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Lin, Xingyu Huang, Xiao Urmann, Katharina Xie, Xing Hoffmann, Michael R. Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane |
title | Digital Loop-Mediated Isothermal Amplification on
a Commercial Membrane |
title_full | Digital Loop-Mediated Isothermal Amplification on
a Commercial Membrane |
title_fullStr | Digital Loop-Mediated Isothermal Amplification on
a Commercial Membrane |
title_full_unstemmed | Digital Loop-Mediated Isothermal Amplification on
a Commercial Membrane |
title_short | Digital Loop-Mediated Isothermal Amplification on
a Commercial Membrane |
title_sort | digital loop-mediated isothermal amplification on
a commercial membrane |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350201/ https://www.ncbi.nlm.nih.gov/pubmed/30604619 http://dx.doi.org/10.1021/acssensors.8b01419 |
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