Cargando…

Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane

[Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error fo...

Descripción completa

Detalles Bibliográficos
Autores principales: Lin, Xingyu, Huang, Xiao, Urmann, Katharina, Xie, Xing, Hoffmann, Michael R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2019
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350201/
https://www.ncbi.nlm.nih.gov/pubmed/30604619
http://dx.doi.org/10.1021/acssensors.8b01419
_version_ 1783390406381142016
author Lin, Xingyu
Huang, Xiao
Urmann, Katharina
Xie, Xing
Hoffmann, Michael R.
author_facet Lin, Xingyu
Huang, Xiao
Urmann, Katharina
Xie, Xing
Hoffmann, Michael R.
author_sort Lin, Xingyu
collection PubMed
description [Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error for digital LAMP on these membranes was analyzed, using a combination of Random Distribution Model and Multivolume Theory. A facile peel-off process was developed for effective droplet formation on the commercial track-etched polycarbonate (PCTE) membrane. Each pore functions as an individual nanoreactor for single DNA amplification. Absolute quantification of bacteria genomic DNA was realized with a dynamic range from 11 to 1.1 × 10(5) copies/μL. One-step digital RT-LAMP was also successfully performed on the membrane for the quantification of MS2 virus in wastewater. With the introduction of new probes, the positive pores can be easily distinguished from negative ones with 100 times difference in fluorescence intensities. Finally, the cost of a disposable membrane is less than $0.10/piece, which, to the best of our knowledge, is the most inexpensive way to perform digital LAMP. The membrane system offers opportunities for point-of-care users or common laboratories to perform digital quantification, single cell analysis, or other bioassays in an inexpensive, flexible, and simplified way.
format Online
Article
Text
id pubmed-6350201
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-63502012019-01-31 Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane Lin, Xingyu Huang, Xiao Urmann, Katharina Xie, Xing Hoffmann, Michael R. ACS Sens [Image: see text] In this work, we report digital loop-mediated isothermal amplification (LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane, without the need for complex chip fabrication or use of specialized equipment. Due to the pore size distribution, the theoretical error for digital LAMP on these membranes was analyzed, using a combination of Random Distribution Model and Multivolume Theory. A facile peel-off process was developed for effective droplet formation on the commercial track-etched polycarbonate (PCTE) membrane. Each pore functions as an individual nanoreactor for single DNA amplification. Absolute quantification of bacteria genomic DNA was realized with a dynamic range from 11 to 1.1 × 10(5) copies/μL. One-step digital RT-LAMP was also successfully performed on the membrane for the quantification of MS2 virus in wastewater. With the introduction of new probes, the positive pores can be easily distinguished from negative ones with 100 times difference in fluorescence intensities. Finally, the cost of a disposable membrane is less than $0.10/piece, which, to the best of our knowledge, is the most inexpensive way to perform digital LAMP. The membrane system offers opportunities for point-of-care users or common laboratories to perform digital quantification, single cell analysis, or other bioassays in an inexpensive, flexible, and simplified way. American Chemical Society 2019-01-03 2019-01-25 /pmc/articles/PMC6350201/ /pubmed/30604619 http://dx.doi.org/10.1021/acssensors.8b01419 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Lin, Xingyu
Huang, Xiao
Urmann, Katharina
Xie, Xing
Hoffmann, Michael R.
Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title_full Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title_fullStr Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title_full_unstemmed Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title_short Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane
title_sort digital loop-mediated isothermal amplification on a commercial membrane
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350201/
https://www.ncbi.nlm.nih.gov/pubmed/30604619
http://dx.doi.org/10.1021/acssensors.8b01419
work_keys_str_mv AT linxingyu digitalloopmediatedisothermalamplificationonacommercialmembrane
AT huangxiao digitalloopmediatedisothermalamplificationonacommercialmembrane
AT urmannkatharina digitalloopmediatedisothermalamplificationonacommercialmembrane
AT xiexing digitalloopmediatedisothermalamplificationonacommercialmembrane
AT hoffmannmichaelr digitalloopmediatedisothermalamplificationonacommercialmembrane