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Computed tomography data collection of the complete human mandible and valid clinical ground truth models
Image-based algorithmic software segmentation is an increasingly important topic in many medical fields. Algorithmic segmentation is used for medical three-dimensional visualization, diagnosis or treatment support, especially in complex medical cases. However, accessible medical databases are limite...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350631/ https://www.ncbi.nlm.nih.gov/pubmed/30694227 http://dx.doi.org/10.1038/sdata.2019.3 |
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author | Wallner, Jürgen Mischak, Irene Jan Egger |
author_facet | Wallner, Jürgen Mischak, Irene Jan Egger |
author_sort | Wallner, Jürgen |
collection | PubMed |
description | Image-based algorithmic software segmentation is an increasingly important topic in many medical fields. Algorithmic segmentation is used for medical three-dimensional visualization, diagnosis or treatment support, especially in complex medical cases. However, accessible medical databases are limited, and valid medical ground truth databases for the evaluation of algorithms are rare and usually comprise only a few images. Inaccuracy or invalidity of medical ground truth data and image-based artefacts also limit the creation of such databases, which is especially relevant for CT data sets of the maxillomandibular complex. This contribution provides a unique and accessible data set of the complete mandible, including 20 valid ground truth segmentation models originating from 10 CT scans from clinical practice without artefacts or faulty slices. From each CT scan, two 3D ground truth models were created by clinical experts through independent manual slice-by-slice segmentation, and the models were statistically compared to prove their validity. These data could be used to conduct serial image studies of the human mandible, evaluating segmentation algorithms and developing adequate image tools. |
format | Online Article Text |
id | pubmed-6350631 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-63506312019-02-20 Computed tomography data collection of the complete human mandible and valid clinical ground truth models Wallner, Jürgen Mischak, Irene Jan Egger Sci Data Data Descriptor Image-based algorithmic software segmentation is an increasingly important topic in many medical fields. Algorithmic segmentation is used for medical three-dimensional visualization, diagnosis or treatment support, especially in complex medical cases. However, accessible medical databases are limited, and valid medical ground truth databases for the evaluation of algorithms are rare and usually comprise only a few images. Inaccuracy or invalidity of medical ground truth data and image-based artefacts also limit the creation of such databases, which is especially relevant for CT data sets of the maxillomandibular complex. This contribution provides a unique and accessible data set of the complete mandible, including 20 valid ground truth segmentation models originating from 10 CT scans from clinical practice without artefacts or faulty slices. From each CT scan, two 3D ground truth models were created by clinical experts through independent manual slice-by-slice segmentation, and the models were statistically compared to prove their validity. These data could be used to conduct serial image studies of the human mandible, evaluating segmentation algorithms and developing adequate image tools. Nature Publishing Group 2019-01-29 /pmc/articles/PMC6350631/ /pubmed/30694227 http://dx.doi.org/10.1038/sdata.2019.3 Text en Copyright © 2019, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
spellingShingle | Data Descriptor Wallner, Jürgen Mischak, Irene Jan Egger Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title | Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title_full | Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title_fullStr | Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title_full_unstemmed | Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title_short | Computed tomography data collection of the complete human mandible and valid clinical ground truth models |
title_sort | computed tomography data collection of the complete human mandible and valid clinical ground truth models |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350631/ https://www.ncbi.nlm.nih.gov/pubmed/30694227 http://dx.doi.org/10.1038/sdata.2019.3 |
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