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Environmental filtering of bacterial functional diversity along an aridity gradient
Studying how metagenome composition and diversity varies along environmental gradients may improve understanding of the general principles of community and ecosystem structuring. We studied soil bacterial metagenomes along a precipitation gradient on the eastern Tibetan Plateau, varying between 500 ...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351613/ https://www.ncbi.nlm.nih.gov/pubmed/30696918 http://dx.doi.org/10.1038/s41598-018-37565-9 |
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author | Song, Ho-Kyung Shi, Yu Yang, Teng Chu, Haiyan He, Jin-Sheng Kim, Hyoki Jablonski, Piotr Adams, Jonathan M. |
author_facet | Song, Ho-Kyung Shi, Yu Yang, Teng Chu, Haiyan He, Jin-Sheng Kim, Hyoki Jablonski, Piotr Adams, Jonathan M. |
author_sort | Song, Ho-Kyung |
collection | PubMed |
description | Studying how metagenome composition and diversity varies along environmental gradients may improve understanding of the general principles of community and ecosystem structuring. We studied soil bacterial metagenomes along a precipitation gradient on the eastern Tibetan Plateau, varying between 500 mm and 60 mm mean annual precipitation (MAP). We found that lower MAP was strongly associated with reduced functional diversity of bacterial genes. It appears that extreme environmental conditions associated with aridity constrain the diversity of functional strategies present in soil biota – analogous to broad scale patterns found in plant functional diversity along environmental gradients. In terms of specific functions, more extreme arid conditions were also associated with increased relative abundance of genes related to dormancy and osmoprotectants. Decreased relative abundance of genes related to antibiotic resistance and virulence in more arid conditions suggests reduced intensity of biotic interaction under extreme physiological conditions. These trends parallel those seen in earlier, more preliminary comparisons of metagenomes across biomes. |
format | Online Article Text |
id | pubmed-6351613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63516132019-01-31 Environmental filtering of bacterial functional diversity along an aridity gradient Song, Ho-Kyung Shi, Yu Yang, Teng Chu, Haiyan He, Jin-Sheng Kim, Hyoki Jablonski, Piotr Adams, Jonathan M. Sci Rep Article Studying how metagenome composition and diversity varies along environmental gradients may improve understanding of the general principles of community and ecosystem structuring. We studied soil bacterial metagenomes along a precipitation gradient on the eastern Tibetan Plateau, varying between 500 mm and 60 mm mean annual precipitation (MAP). We found that lower MAP was strongly associated with reduced functional diversity of bacterial genes. It appears that extreme environmental conditions associated with aridity constrain the diversity of functional strategies present in soil biota – analogous to broad scale patterns found in plant functional diversity along environmental gradients. In terms of specific functions, more extreme arid conditions were also associated with increased relative abundance of genes related to dormancy and osmoprotectants. Decreased relative abundance of genes related to antibiotic resistance and virulence in more arid conditions suggests reduced intensity of biotic interaction under extreme physiological conditions. These trends parallel those seen in earlier, more preliminary comparisons of metagenomes across biomes. Nature Publishing Group UK 2019-01-29 /pmc/articles/PMC6351613/ /pubmed/30696918 http://dx.doi.org/10.1038/s41598-018-37565-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Song, Ho-Kyung Shi, Yu Yang, Teng Chu, Haiyan He, Jin-Sheng Kim, Hyoki Jablonski, Piotr Adams, Jonathan M. Environmental filtering of bacterial functional diversity along an aridity gradient |
title | Environmental filtering of bacterial functional diversity along an aridity gradient |
title_full | Environmental filtering of bacterial functional diversity along an aridity gradient |
title_fullStr | Environmental filtering of bacterial functional diversity along an aridity gradient |
title_full_unstemmed | Environmental filtering of bacterial functional diversity along an aridity gradient |
title_short | Environmental filtering of bacterial functional diversity along an aridity gradient |
title_sort | environmental filtering of bacterial functional diversity along an aridity gradient |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351613/ https://www.ncbi.nlm.nih.gov/pubmed/30696918 http://dx.doi.org/10.1038/s41598-018-37565-9 |
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