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Breast cancer detection using deep convolutional neural networks and support vector machines
It is important to detect breast cancer as early as possible. In this manuscript, a new methodology for classifying breast cancer using deep learning and some segmentation techniques are introduced. A new computer aided detection (CAD) system is proposed for classifying benign and malignant mass tum...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354665/ https://www.ncbi.nlm.nih.gov/pubmed/30713814 http://dx.doi.org/10.7717/peerj.6201 |
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author | Ragab, Dina A. Sharkas, Maha Marshall, Stephen Ren, Jinchang |
author_facet | Ragab, Dina A. Sharkas, Maha Marshall, Stephen Ren, Jinchang |
author_sort | Ragab, Dina A. |
collection | PubMed |
description | It is important to detect breast cancer as early as possible. In this manuscript, a new methodology for classifying breast cancer using deep learning and some segmentation techniques are introduced. A new computer aided detection (CAD) system is proposed for classifying benign and malignant mass tumors in breast mammography images. In this CAD system, two segmentation approaches are used. The first approach involves determining the region of interest (ROI) manually, while the second approach uses the technique of threshold and region based. The deep convolutional neural network (DCNN) is used for feature extraction. A well-known DCNN architecture named AlexNet is used and is fine-tuned to classify two classes instead of 1,000 classes. The last fully connected (fc) layer is connected to the support vector machine (SVM) classifier to obtain better accuracy. The results are obtained using the following publicly available datasets (1) the digital database for screening mammography (DDSM); and (2) the Curated Breast Imaging Subset of DDSM (CBIS-DDSM). Training on a large number of data gives high accuracy rate. Nevertheless, the biomedical datasets contain a relatively small number of samples due to limited patient volume. Accordingly, data augmentation is a method for increasing the size of the input data by generating new data from the original input data. There are many forms for the data augmentation; the one used here is the rotation. The accuracy of the new-trained DCNN architecture is 71.01% when cropping the ROI manually from the mammogram. The highest area under the curve (AUC) achieved was 0.88 (88%) for the samples obtained from both segmentation techniques. Moreover, when using the samples obtained from the CBIS-DDSM, the accuracy of the DCNN is increased to 73.6%. Consequently, the SVM accuracy becomes 87.2% with an AUC equaling to 0.94 (94%). This is the highest AUC value compared to previous work using the same conditions. |
format | Online Article Text |
id | pubmed-6354665 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63546652019-02-01 Breast cancer detection using deep convolutional neural networks and support vector machines Ragab, Dina A. Sharkas, Maha Marshall, Stephen Ren, Jinchang PeerJ Data Mining and Machine Learning It is important to detect breast cancer as early as possible. In this manuscript, a new methodology for classifying breast cancer using deep learning and some segmentation techniques are introduced. A new computer aided detection (CAD) system is proposed for classifying benign and malignant mass tumors in breast mammography images. In this CAD system, two segmentation approaches are used. The first approach involves determining the region of interest (ROI) manually, while the second approach uses the technique of threshold and region based. The deep convolutional neural network (DCNN) is used for feature extraction. A well-known DCNN architecture named AlexNet is used and is fine-tuned to classify two classes instead of 1,000 classes. The last fully connected (fc) layer is connected to the support vector machine (SVM) classifier to obtain better accuracy. The results are obtained using the following publicly available datasets (1) the digital database for screening mammography (DDSM); and (2) the Curated Breast Imaging Subset of DDSM (CBIS-DDSM). Training on a large number of data gives high accuracy rate. Nevertheless, the biomedical datasets contain a relatively small number of samples due to limited patient volume. Accordingly, data augmentation is a method for increasing the size of the input data by generating new data from the original input data. There are many forms for the data augmentation; the one used here is the rotation. The accuracy of the new-trained DCNN architecture is 71.01% when cropping the ROI manually from the mammogram. The highest area under the curve (AUC) achieved was 0.88 (88%) for the samples obtained from both segmentation techniques. Moreover, when using the samples obtained from the CBIS-DDSM, the accuracy of the DCNN is increased to 73.6%. Consequently, the SVM accuracy becomes 87.2% with an AUC equaling to 0.94 (94%). This is the highest AUC value compared to previous work using the same conditions. PeerJ Inc. 2019-01-28 /pmc/articles/PMC6354665/ /pubmed/30713814 http://dx.doi.org/10.7717/peerj.6201 Text en ©2019 Ragab et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Data Mining and Machine Learning Ragab, Dina A. Sharkas, Maha Marshall, Stephen Ren, Jinchang Breast cancer detection using deep convolutional neural networks and support vector machines |
title | Breast cancer detection using deep convolutional neural networks and support vector machines |
title_full | Breast cancer detection using deep convolutional neural networks and support vector machines |
title_fullStr | Breast cancer detection using deep convolutional neural networks and support vector machines |
title_full_unstemmed | Breast cancer detection using deep convolutional neural networks and support vector machines |
title_short | Breast cancer detection using deep convolutional neural networks and support vector machines |
title_sort | breast cancer detection using deep convolutional neural networks and support vector machines |
topic | Data Mining and Machine Learning |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354665/ https://www.ncbi.nlm.nih.gov/pubmed/30713814 http://dx.doi.org/10.7717/peerj.6201 |
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