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Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning

BACKGROUND: Exhaled aerosols from lungs have unique patterns, and their variation can be correlated to the underlying lung structure and associated abnormities. However, it is challenging to characterize such aerosol patterns and differentiate their difference because of their complexity. This chall...

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Autores principales: Xi, Jinxiang, Zhao, Weizhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354993/
https://www.ncbi.nlm.nih.gov/pubmed/30703132
http://dx.doi.org/10.1371/journal.pone.0211413
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author Xi, Jinxiang
Zhao, Weizhong
author_facet Xi, Jinxiang
Zhao, Weizhong
author_sort Xi, Jinxiang
collection PubMed
description BACKGROUND: Exhaled aerosols from lungs have unique patterns, and their variation can be correlated to the underlying lung structure and associated abnormities. However, it is challenging to characterize such aerosol patterns and differentiate their difference because of their complexity. This challenge is even greater for small airway diseases, where the disturbance signals are weak. OBJECTIVES AND METHODS: The objective of this study is exploiting different feature extraction algorithms to develop a practical classifier to diagnose obstructive lung diseases using exhaled aerosol images. These include proper orthogonal decomposition (POD), principal component analysis (PCA), dynamic mode decomposition (DMD), and DMD with control (DMDC). Aerosol images were generated via physiology-based simulations in one normal and four diseased airway models in G7-9 bronchioles. The image data were classified using both the support vector machine (SVM) and random forest (RF) algorithms. The effectiveness of different features was evaluated by classification accuracy and misclassification rate. FINDINGS: Results show a significantly higher performance using dynamic feature extractions (DMD and DMDC) than static algorithms (POD and PCA). Adding the control variables to DMD further improved classification accuracy. Comparing the classification methods, RF persistently outperformed SVM for all types of features considered. While the performance of RF constantly increased with the number of features retained, the performance of SVM peaked at 50 and decreased thereafter. The 5-class classification accuracy was 94.8% using the DMDC-RF model and 93.0% using the DMD-RF model, both of which were higher than 87.0% in the previous study that used fractal dimension features. CONCLUSION: Considering that disease progression is inherently a dynamic process, DMD(C)-based feature extraction preserves temporal information and is preferred over POD and PCA. Compared with hand-crafted features like fractals, feature extraction by DMD and DMDC is automatic and more accurate.
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spelling pubmed-63549932019-02-15 Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning Xi, Jinxiang Zhao, Weizhong PLoS One Research Article BACKGROUND: Exhaled aerosols from lungs have unique patterns, and their variation can be correlated to the underlying lung structure and associated abnormities. However, it is challenging to characterize such aerosol patterns and differentiate their difference because of their complexity. This challenge is even greater for small airway diseases, where the disturbance signals are weak. OBJECTIVES AND METHODS: The objective of this study is exploiting different feature extraction algorithms to develop a practical classifier to diagnose obstructive lung diseases using exhaled aerosol images. These include proper orthogonal decomposition (POD), principal component analysis (PCA), dynamic mode decomposition (DMD), and DMD with control (DMDC). Aerosol images were generated via physiology-based simulations in one normal and four diseased airway models in G7-9 bronchioles. The image data were classified using both the support vector machine (SVM) and random forest (RF) algorithms. The effectiveness of different features was evaluated by classification accuracy and misclassification rate. FINDINGS: Results show a significantly higher performance using dynamic feature extractions (DMD and DMDC) than static algorithms (POD and PCA). Adding the control variables to DMD further improved classification accuracy. Comparing the classification methods, RF persistently outperformed SVM for all types of features considered. While the performance of RF constantly increased with the number of features retained, the performance of SVM peaked at 50 and decreased thereafter. The 5-class classification accuracy was 94.8% using the DMDC-RF model and 93.0% using the DMD-RF model, both of which were higher than 87.0% in the previous study that used fractal dimension features. CONCLUSION: Considering that disease progression is inherently a dynamic process, DMD(C)-based feature extraction preserves temporal information and is preferred over POD and PCA. Compared with hand-crafted features like fractals, feature extraction by DMD and DMDC is automatic and more accurate. Public Library of Science 2019-01-31 /pmc/articles/PMC6354993/ /pubmed/30703132 http://dx.doi.org/10.1371/journal.pone.0211413 Text en © 2019 Xi, Zhao http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Xi, Jinxiang
Zhao, Weizhong
Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title_full Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title_fullStr Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title_full_unstemmed Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title_short Correlating exhaled aerosol images to small airway obstructive diseases: A study with dynamic mode decomposition and machine learning
title_sort correlating exhaled aerosol images to small airway obstructive diseases: a study with dynamic mode decomposition and machine learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354993/
https://www.ncbi.nlm.nih.gov/pubmed/30703132
http://dx.doi.org/10.1371/journal.pone.0211413
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