Cargando…
Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physio...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355791/ https://www.ncbi.nlm.nih.gov/pubmed/30705350 http://dx.doi.org/10.1038/s41598-018-37662-9 |
_version_ | 1783391389323624448 |
---|---|
author | Bishwal, Subasa C. Das, Mrinal K. Badireddy, Vinod K. Dabral, Deepti Das, Aleena Mahapatra, Alok R. Sahu, Sukanya Malakar, Dipankar Singh, I. Ibungo Mazumdar, Himanghsu Patgiri, Saurav J. Deka, Trinayan Kapfo, Wetetsho Liegise, Kevideme Kupa, Rukuwe-u Debnath, Sanjita Bhowmik, Rajesh Debnath, Rahul Behera, Rajendra K. Pillai, Manoj G. Deuri, Pranjal Nath, Reema Khalo, K. Pewezo Sing, W. Asoka Pandit, Bhaswati Das, Anjan Bhattacharya, Sibabrata Behera, Digambar Saikia, Lahari Khamo, Vinotsole Nanda, Ranjan K. |
author_facet | Bishwal, Subasa C. Das, Mrinal K. Badireddy, Vinod K. Dabral, Deepti Das, Aleena Mahapatra, Alok R. Sahu, Sukanya Malakar, Dipankar Singh, I. Ibungo Mazumdar, Himanghsu Patgiri, Saurav J. Deka, Trinayan Kapfo, Wetetsho Liegise, Kevideme Kupa, Rukuwe-u Debnath, Sanjita Bhowmik, Rajesh Debnath, Rahul Behera, Rajendra K. Pillai, Manoj G. Deuri, Pranjal Nath, Reema Khalo, K. Pewezo Sing, W. Asoka Pandit, Bhaswati Das, Anjan Bhattacharya, Sibabrata Behera, Digambar Saikia, Lahari Khamo, Vinotsole Nanda, Ranjan K. |
author_sort | Bishwal, Subasa C. |
collection | PubMed |
description | Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physiology. Out of the study population (n = 118), sputum proteins isolated from discovery set samples (n = 20) was used for an 8-plex isobaric tag for relative and absolute concentration analysis. A minimum set of protein with at least log(2)(ATB/NTB) >±1.0 in ATB was selected as biosignature and validated in 32 samples. Predictive accuracy was calculated from area under the receiver operating characteristic curve (AUC of ROC) using a confirmatory set (n = 50) by Western blot analysis. Mass spectrometry analysis identified a set of 192 sputum proteins, out of which a signature of β-integrin, vitamin D binding protein:DBP, uteroglobin, profilin and cathelicidin antimicrobial peptide was sufficient to differentiate ATB from NTB. AUC of ROC of the biosignature was calculated to 0.75. A shift in DBP-antimicrobial peptide (AMP) axis in the lungs of tuberculosis patients is observed. The identified sputum protein signature is a promising panel to differentiate ATB from NTB groups and suggest a deregulated DBP-AMP axis in lungs of tuberculosis patients. |
format | Online Article Text |
id | pubmed-6355791 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63557912019-02-01 Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients Bishwal, Subasa C. Das, Mrinal K. Badireddy, Vinod K. Dabral, Deepti Das, Aleena Mahapatra, Alok R. Sahu, Sukanya Malakar, Dipankar Singh, I. Ibungo Mazumdar, Himanghsu Patgiri, Saurav J. Deka, Trinayan Kapfo, Wetetsho Liegise, Kevideme Kupa, Rukuwe-u Debnath, Sanjita Bhowmik, Rajesh Debnath, Rahul Behera, Rajendra K. Pillai, Manoj G. Deuri, Pranjal Nath, Reema Khalo, K. Pewezo Sing, W. Asoka Pandit, Bhaswati Das, Anjan Bhattacharya, Sibabrata Behera, Digambar Saikia, Lahari Khamo, Vinotsole Nanda, Ranjan K. Sci Rep Article Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physiology. Out of the study population (n = 118), sputum proteins isolated from discovery set samples (n = 20) was used for an 8-plex isobaric tag for relative and absolute concentration analysis. A minimum set of protein with at least log(2)(ATB/NTB) >±1.0 in ATB was selected as biosignature and validated in 32 samples. Predictive accuracy was calculated from area under the receiver operating characteristic curve (AUC of ROC) using a confirmatory set (n = 50) by Western blot analysis. Mass spectrometry analysis identified a set of 192 sputum proteins, out of which a signature of β-integrin, vitamin D binding protein:DBP, uteroglobin, profilin and cathelicidin antimicrobial peptide was sufficient to differentiate ATB from NTB. AUC of ROC of the biosignature was calculated to 0.75. A shift in DBP-antimicrobial peptide (AMP) axis in the lungs of tuberculosis patients is observed. The identified sputum protein signature is a promising panel to differentiate ATB from NTB groups and suggest a deregulated DBP-AMP axis in lungs of tuberculosis patients. Nature Publishing Group UK 2019-01-31 /pmc/articles/PMC6355791/ /pubmed/30705350 http://dx.doi.org/10.1038/s41598-018-37662-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bishwal, Subasa C. Das, Mrinal K. Badireddy, Vinod K. Dabral, Deepti Das, Aleena Mahapatra, Alok R. Sahu, Sukanya Malakar, Dipankar Singh, I. Ibungo Mazumdar, Himanghsu Patgiri, Saurav J. Deka, Trinayan Kapfo, Wetetsho Liegise, Kevideme Kupa, Rukuwe-u Debnath, Sanjita Bhowmik, Rajesh Debnath, Rahul Behera, Rajendra K. Pillai, Manoj G. Deuri, Pranjal Nath, Reema Khalo, K. Pewezo Sing, W. Asoka Pandit, Bhaswati Das, Anjan Bhattacharya, Sibabrata Behera, Digambar Saikia, Lahari Khamo, Vinotsole Nanda, Ranjan K. Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title | Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title_full | Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title_fullStr | Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title_full_unstemmed | Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title_short | Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients |
title_sort | sputum proteomics reveals a shift in vitamin d-binding protein and antimicrobial protein axis in tuberculosis patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355791/ https://www.ncbi.nlm.nih.gov/pubmed/30705350 http://dx.doi.org/10.1038/s41598-018-37662-9 |
work_keys_str_mv | AT bishwalsubasac sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT dasmrinalk sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT badireddyvinodk sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT dabraldeepti sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT dasaleena sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT mahapatraalokr sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT sahusukanya sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT malakardipankar sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT singhiibungo sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT mazumdarhimanghsu sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT patgirisauravj sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT dekatrinayan sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT kapfowetetsho sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT liegisekevideme sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT kuparukuweu sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT debnathsanjita sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT bhowmikrajesh sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT debnathrahul sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT beherarajendrak sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT pillaimanojg sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT deuripranjal sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT nathreema sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT khalokpewezo sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT singwasoka sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT panditbhaswati sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT dasanjan sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT bhattacharyasibabrata sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT beheradigambar sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT saikialahari sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT khamovinotsole sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients AT nandaranjank sputumproteomicsrevealsashiftinvitamindbindingproteinandantimicrobialproteinaxisintuberculosispatients |