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Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients

Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physio...

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Autores principales: Bishwal, Subasa C., Das, Mrinal K., Badireddy, Vinod K., Dabral, Deepti, Das, Aleena, Mahapatra, Alok R., Sahu, Sukanya, Malakar, Dipankar, Singh, I. Ibungo, Mazumdar, Himanghsu, Patgiri, Saurav J., Deka, Trinayan, Kapfo, Wetetsho, Liegise, Kevideme, Kupa, Rukuwe-u, Debnath, Sanjita, Bhowmik, Rajesh, Debnath, Rahul, Behera, Rajendra K., Pillai, Manoj G., Deuri, Pranjal, Nath, Reema, Khalo, K. Pewezo, Sing, W. Asoka, Pandit, Bhaswati, Das, Anjan, Bhattacharya, Sibabrata, Behera, Digambar, Saikia, Lahari, Khamo, Vinotsole, Nanda, Ranjan K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355791/
https://www.ncbi.nlm.nih.gov/pubmed/30705350
http://dx.doi.org/10.1038/s41598-018-37662-9
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author Bishwal, Subasa C.
Das, Mrinal K.
Badireddy, Vinod K.
Dabral, Deepti
Das, Aleena
Mahapatra, Alok R.
Sahu, Sukanya
Malakar, Dipankar
Singh, I. Ibungo
Mazumdar, Himanghsu
Patgiri, Saurav J.
Deka, Trinayan
Kapfo, Wetetsho
Liegise, Kevideme
Kupa, Rukuwe-u
Debnath, Sanjita
Bhowmik, Rajesh
Debnath, Rahul
Behera, Rajendra K.
Pillai, Manoj G.
Deuri, Pranjal
Nath, Reema
Khalo, K. Pewezo
Sing, W. Asoka
Pandit, Bhaswati
Das, Anjan
Bhattacharya, Sibabrata
Behera, Digambar
Saikia, Lahari
Khamo, Vinotsole
Nanda, Ranjan K.
author_facet Bishwal, Subasa C.
Das, Mrinal K.
Badireddy, Vinod K.
Dabral, Deepti
Das, Aleena
Mahapatra, Alok R.
Sahu, Sukanya
Malakar, Dipankar
Singh, I. Ibungo
Mazumdar, Himanghsu
Patgiri, Saurav J.
Deka, Trinayan
Kapfo, Wetetsho
Liegise, Kevideme
Kupa, Rukuwe-u
Debnath, Sanjita
Bhowmik, Rajesh
Debnath, Rahul
Behera, Rajendra K.
Pillai, Manoj G.
Deuri, Pranjal
Nath, Reema
Khalo, K. Pewezo
Sing, W. Asoka
Pandit, Bhaswati
Das, Anjan
Bhattacharya, Sibabrata
Behera, Digambar
Saikia, Lahari
Khamo, Vinotsole
Nanda, Ranjan K.
author_sort Bishwal, Subasa C.
collection PubMed
description Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physiology. Out of the study population (n = 118), sputum proteins isolated from discovery set samples (n = 20) was used for an 8-plex isobaric tag for relative and absolute concentration analysis. A minimum set of protein with at least log(2)(ATB/NTB) >±1.0 in ATB was selected as biosignature and validated in 32 samples. Predictive accuracy was calculated from area under the receiver operating characteristic curve (AUC of ROC) using a confirmatory set (n = 50) by Western blot analysis. Mass spectrometry analysis identified a set of 192 sputum proteins, out of which a signature of β-integrin, vitamin D binding protein:DBP, uteroglobin, profilin and cathelicidin antimicrobial peptide was sufficient to differentiate ATB from NTB. AUC of ROC of the biosignature was calculated to 0.75. A shift in DBP-antimicrobial peptide (AMP) axis in the lungs of tuberculosis patients is observed. The identified sputum protein signature is a promising panel to differentiate ATB from NTB groups and suggest a deregulated DBP-AMP axis in lungs of tuberculosis patients.
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spelling pubmed-63557912019-02-01 Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients Bishwal, Subasa C. Das, Mrinal K. Badireddy, Vinod K. Dabral, Deepti Das, Aleena Mahapatra, Alok R. Sahu, Sukanya Malakar, Dipankar Singh, I. Ibungo Mazumdar, Himanghsu Patgiri, Saurav J. Deka, Trinayan Kapfo, Wetetsho Liegise, Kevideme Kupa, Rukuwe-u Debnath, Sanjita Bhowmik, Rajesh Debnath, Rahul Behera, Rajendra K. Pillai, Manoj G. Deuri, Pranjal Nath, Reema Khalo, K. Pewezo Sing, W. Asoka Pandit, Bhaswati Das, Anjan Bhattacharya, Sibabrata Behera, Digambar Saikia, Lahari Khamo, Vinotsole Nanda, Ranjan K. Sci Rep Article Existing understanding of molecular composition of sputum and its role in tuberculosis patients is variously limited to its diagnostic potential. We sought to identify infection induced sputum proteome alteration in active/non tuberculosis patients (A/NTB) and their role in altered lung patho-physiology. Out of the study population (n = 118), sputum proteins isolated from discovery set samples (n = 20) was used for an 8-plex isobaric tag for relative and absolute concentration analysis. A minimum set of protein with at least log(2)(ATB/NTB) >±1.0 in ATB was selected as biosignature and validated in 32 samples. Predictive accuracy was calculated from area under the receiver operating characteristic curve (AUC of ROC) using a confirmatory set (n = 50) by Western blot analysis. Mass spectrometry analysis identified a set of 192 sputum proteins, out of which a signature of β-integrin, vitamin D binding protein:DBP, uteroglobin, profilin and cathelicidin antimicrobial peptide was sufficient to differentiate ATB from NTB. AUC of ROC of the biosignature was calculated to 0.75. A shift in DBP-antimicrobial peptide (AMP) axis in the lungs of tuberculosis patients is observed. The identified sputum protein signature is a promising panel to differentiate ATB from NTB groups and suggest a deregulated DBP-AMP axis in lungs of tuberculosis patients. Nature Publishing Group UK 2019-01-31 /pmc/articles/PMC6355791/ /pubmed/30705350 http://dx.doi.org/10.1038/s41598-018-37662-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bishwal, Subasa C.
Das, Mrinal K.
Badireddy, Vinod K.
Dabral, Deepti
Das, Aleena
Mahapatra, Alok R.
Sahu, Sukanya
Malakar, Dipankar
Singh, I. Ibungo
Mazumdar, Himanghsu
Patgiri, Saurav J.
Deka, Trinayan
Kapfo, Wetetsho
Liegise, Kevideme
Kupa, Rukuwe-u
Debnath, Sanjita
Bhowmik, Rajesh
Debnath, Rahul
Behera, Rajendra K.
Pillai, Manoj G.
Deuri, Pranjal
Nath, Reema
Khalo, K. Pewezo
Sing, W. Asoka
Pandit, Bhaswati
Das, Anjan
Bhattacharya, Sibabrata
Behera, Digambar
Saikia, Lahari
Khamo, Vinotsole
Nanda, Ranjan K.
Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title_full Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title_fullStr Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title_full_unstemmed Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title_short Sputum Proteomics Reveals a Shift in Vitamin D-binding Protein and Antimicrobial Protein Axis in Tuberculosis Patients
title_sort sputum proteomics reveals a shift in vitamin d-binding protein and antimicrobial protein axis in tuberculosis patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355791/
https://www.ncbi.nlm.nih.gov/pubmed/30705350
http://dx.doi.org/10.1038/s41598-018-37662-9
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