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Datasets for genome assembly of six underutilized Indonesian fruits
Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterop...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355957/ https://www.ncbi.nlm.nih.gov/pubmed/30740478 http://dx.doi.org/10.1016/j.dib.2018.12.070 |
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author | Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Siregar, Ulfah Juniarti Widodo, Winarso Drajad Inoue, Eiichi |
author_facet | Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Siregar, Ulfah Juniarti Widodo, Winarso Drajad Inoue, Eiichi |
author_sort | Matra, Deden Derajat |
collection | PubMed |
description | Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397). |
format | Online Article Text |
id | pubmed-6355957 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-63559572019-02-08 Datasets for genome assembly of six underutilized Indonesian fruits Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Siregar, Ulfah Juniarti Widodo, Winarso Drajad Inoue, Eiichi Data Brief Agricultural and Biological Science Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397). Elsevier 2018-12-28 /pmc/articles/PMC6355957/ /pubmed/30740478 http://dx.doi.org/10.1016/j.dib.2018.12.070 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Siregar, Ulfah Juniarti Widodo, Winarso Drajad Inoue, Eiichi Datasets for genome assembly of six underutilized Indonesian fruits |
title | Datasets for genome assembly of six underutilized Indonesian fruits |
title_full | Datasets for genome assembly of six underutilized Indonesian fruits |
title_fullStr | Datasets for genome assembly of six underutilized Indonesian fruits |
title_full_unstemmed | Datasets for genome assembly of six underutilized Indonesian fruits |
title_short | Datasets for genome assembly of six underutilized Indonesian fruits |
title_sort | datasets for genome assembly of six underutilized indonesian fruits |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355957/ https://www.ncbi.nlm.nih.gov/pubmed/30740478 http://dx.doi.org/10.1016/j.dib.2018.12.070 |
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