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Datasets for genome assembly of six underutilized Indonesian fruits

Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterop...

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Autores principales: Matra, Deden Derajat, Ritonga, Arya Widura, Natawijaya, Azis, Poerwanto, Roedhy, Sobir, Siregar, Ulfah Juniarti, Widodo, Winarso Drajad, Inoue, Eiichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355957/
https://www.ncbi.nlm.nih.gov/pubmed/30740478
http://dx.doi.org/10.1016/j.dib.2018.12.070
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author Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Siregar, Ulfah Juniarti
Widodo, Winarso Drajad
Inoue, Eiichi
author_facet Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Siregar, Ulfah Juniarti
Widodo, Winarso Drajad
Inoue, Eiichi
author_sort Matra, Deden Derajat
collection PubMed
description Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397).
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spelling pubmed-63559572019-02-08 Datasets for genome assembly of six underutilized Indonesian fruits Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Siregar, Ulfah Juniarti Widodo, Winarso Drajad Inoue, Eiichi Data Brief Agricultural and Biological Science Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397). Elsevier 2018-12-28 /pmc/articles/PMC6355957/ /pubmed/30740478 http://dx.doi.org/10.1016/j.dib.2018.12.070 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Siregar, Ulfah Juniarti
Widodo, Winarso Drajad
Inoue, Eiichi
Datasets for genome assembly of six underutilized Indonesian fruits
title Datasets for genome assembly of six underutilized Indonesian fruits
title_full Datasets for genome assembly of six underutilized Indonesian fruits
title_fullStr Datasets for genome assembly of six underutilized Indonesian fruits
title_full_unstemmed Datasets for genome assembly of six underutilized Indonesian fruits
title_short Datasets for genome assembly of six underutilized Indonesian fruits
title_sort datasets for genome assembly of six underutilized indonesian fruits
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355957/
https://www.ncbi.nlm.nih.gov/pubmed/30740478
http://dx.doi.org/10.1016/j.dib.2018.12.070
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