Cargando…

A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads

The advent of third-generation sequencing (TGS) technologies, such as the Pacific Biosciences (PacBio) and Oxford Nanopore machines, provides new possibilities for contig assembly, scaffolding, and high-performance computing in bioinformatics due to its long reads. However, the high error rate and p...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Wenjing, Huang, Neng, Zheng, Jiantao, Liao, Xingyu, Wang, Jianxin, Li, Hong-Dong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6356754/ https://www.ncbi.nlm.nih.gov/pubmed/30646604 http://dx.doi.org/10.3390/genes10010044

Ejemplares similares

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data
por: Fukasawa, Yoshinori, et al.
Publicado: (2020)

Improving protein domain classification for third-generation sequencing reads using deep learning
por: Du, Nan, et al.
Publicado: (2021)

TGStools: A Bioinformatics Suit to Facilitate Transcriptome Analysis of Long Reads from Third Generation Sequencing Platform
por: Chen, Danze, et al.
Publicado: (2019)

The third generation sequencing: the advanced approach to genetic diseases
por: Xiao, Tiantian, et al.
Publicado: (2020)

QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform
por: Shrestha, Ram Krishna, et al.
Publicado: (2014)

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data
por: Jayakumar, Vasanthan, et al.
Publicado: (2017)

LCAT: an isoform-sensitive error correction for transcriptome sequencing long reads
por: Zhu, Wufei, et al.
Publicado: (2023)

Next-Generation Sequencing (NGS) and Third-Generation Sequencing (TGS) for the Diagnosis of Thalassemia
por: Hassan, Syahzuwan, et al.
Publicado: (2023)

MASQC: Next Generation Sequencing Assists Third Generation Sequencing for Quality Control in N6-Methyladenine DNA Identification
por: Yang, Siqian, et al.
Publicado: (2020)

PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores
por: Ono, Yukiteru, et al.
Publicado: (2020)

Application of third-generation sequencing to herbal genomics
por: Gao, Longlong, et al.
Publicado: (2023)

Application of third-generation sequencing in cancer research
por: Chen, Zhiao, et al.
Publicado: (2021)

Accurate estimation of short read mapping quality for next-generation genome sequencing
por: Ruffalo, Matthew, et al.
Publicado: (2012)

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
por: Ye, Chengxi, et al.
Publicado: (2016)

High-Quality Draft Genome Sequence of Kibdelosporangium philippinense, Generated by Hybrid Assembly of Short and Long Sequencing Reads
por: Fedorov, Eugenia A., et al.
Publicado: (2022)

RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads
por: Liao, Xingyu, et al.
Publicado: (2020)

Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms
por: Suzuki, Shingo, et al.
Publicado: (2011)

Software for pre-processing Illumina next-generation sequencing short read sequences
por: Chen, Chuming, et al.
Publicado: (2014)

Pattern Recognition on Read Positioning in Next Generation Sequencing
por: Byeon, Boseon, et al.
Publicado: (2016)

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing
por: Zhang, Jun-Yi, et al.
Publicado: (2016)

Oxford nanopore long-read sequencing enables the generation of complete bacterial and plasmid genomes without short-read sequencing
por: Zhao, Wenxuan, et al.
Publicado: (2023)

Single-cell RNA-seq analysis of mouse preimplantation embryos by third-generation sequencing
por: Fan, Xiaoying, et al.
Publicado: (2020)

Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data
por: Jung, Chol-Hee, et al.
Publicado: (2010)

Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis
por: Peker, Nilay, et al.
Publicado: (2021)

Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian
por: Kim, Sun-Hee, et al.
Publicado: (2021)

Recovery of human gut microbiota genomes with third-generation sequencing
por: Li, Yanfei, et al.
Publicado: (2021)

Benchmarking second and third-generation sequencing platforms for microbial metagenomics
por: Meslier, Victoria, et al.
Publicado: (2022)

Identification of rare thalassemia variants using third-generation sequencing
por: Liu, Qin, et al.
Publicado: (2023)

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
por: Schwartz, Schraga, et al.
Publicado: (2011)

AdapterRemoval: easy cleaning of next-generation sequencing reads
por: Lindgreen, Stinus
Publicado: (2012)

Next generation sequencing reads comparison with an alignment-free distance
por: Weitschek, Emanuel, et al.
Publicado: (2014)

Full Genome Sequence of the Western Reserve Strain of Vaccinia Virus Determined by Third-Generation Sequencing
por: Prazsák, István, et al.
Publicado: (2018)

Gene sequencing and result analysis of balanced translocation carriers by third-generation gene sequencing technology
por: Zeng, Xiaoqi, et al.
Publicado: (2023)

Micropathogen community identification in ticks (Acari: Ixodidae) using third-generation sequencing
por: Luo, Jin, et al.
Publicado: (2021)

An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads
por: Warnke, Julia D, et al.
Publicado: (2013)

A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies
por: Puente-Sánchez, Fernando, et al.
Publicado: (2016)

The Sequence Read Archive
por: Leinonen, Rasko, et al.
Publicado: (2011)

CoverView: a sequence quality evaluation tool for next generation sequencing data
por: Münz, Márton, et al.
Publicado: (2018)

Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics
por: Athanasopoulou, Konstantina, et al.
Publicado: (2021)

Analysis of rare thalassemia genetic variants based on third-generation sequencing
por: Peng, Cuiting, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_k44i23r14mm7rc8ab99poov5ps