Cargando…
The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis
Bufadienolide-like chemicals are mostly composed of the active ingredient of Chansu and they have anti-inflammatory, tumor-suppressing, and anti-pain activities; however, their mechanism is unclear. This work used bioinformatics analysis to study this mechanism via gene expression profiles of bufadi...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357202/ https://www.ncbi.nlm.nih.gov/pubmed/30646630 http://dx.doi.org/10.3390/cancers11010091 |
_version_ | 1783391748823711744 |
---|---|
author | Zhang, Yingbo Tang, Xiaomin Pang, Yuxin Huang, Luqi Wang, Dan Yuan, Chao Hu, Xuan Qu, Liping |
author_facet | Zhang, Yingbo Tang, Xiaomin Pang, Yuxin Huang, Luqi Wang, Dan Yuan, Chao Hu, Xuan Qu, Liping |
author_sort | Zhang, Yingbo |
collection | PubMed |
description | Bufadienolide-like chemicals are mostly composed of the active ingredient of Chansu and they have anti-inflammatory, tumor-suppressing, and anti-pain activities; however, their mechanism is unclear. This work used bioinformatics analysis to study this mechanism via gene expression profiles of bufadienolide-like chemicals: (1) Differentially expressed gene identification combined with gene set variation analysis, (2) similar small -molecule detection, (3) tissue-specific co-expression network construction, (4) differentially regulated sub-networks related to breast cancer phenome, (5) differentially regulated sub-networks with potential cardiotoxicity, and (6) hub gene selection and their relation to survival probability. The results indicated that bufadienolide-like chemicals usually had the same target as valproic acid and estradiol, etc. They could disturb the pathways in RNA splicing, the apoptotic process, cell migration, extracellular matrix organization, adherens junction organization, synaptic transmission, Wnt signaling, AK-STAT signaling, BMP signaling pathway, and protein folding. We also investigated the potential cardiotoxicity and found a dysregulated subnetwork related to membrane depolarization during action potential, retinoic acid receptor binding, GABA receptor binding, positive regulation of nuclear division, negative regulation of viral genome replication, and negative regulation of the viral life cycle. These may play important roles in the cardiotoxicity of bufadienolide-like chemicals. The results may highlight the potential anticancer mechanism and cardiotoxicity of Chansu, and could also explain the ability of bufadienolide-like chemicals to be used as hormones and anticancer and vasoprotectives agents. |
format | Online Article Text |
id | pubmed-6357202 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-63572022019-02-05 The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis Zhang, Yingbo Tang, Xiaomin Pang, Yuxin Huang, Luqi Wang, Dan Yuan, Chao Hu, Xuan Qu, Liping Cancers (Basel) Article Bufadienolide-like chemicals are mostly composed of the active ingredient of Chansu and they have anti-inflammatory, tumor-suppressing, and anti-pain activities; however, their mechanism is unclear. This work used bioinformatics analysis to study this mechanism via gene expression profiles of bufadienolide-like chemicals: (1) Differentially expressed gene identification combined with gene set variation analysis, (2) similar small -molecule detection, (3) tissue-specific co-expression network construction, (4) differentially regulated sub-networks related to breast cancer phenome, (5) differentially regulated sub-networks with potential cardiotoxicity, and (6) hub gene selection and their relation to survival probability. The results indicated that bufadienolide-like chemicals usually had the same target as valproic acid and estradiol, etc. They could disturb the pathways in RNA splicing, the apoptotic process, cell migration, extracellular matrix organization, adherens junction organization, synaptic transmission, Wnt signaling, AK-STAT signaling, BMP signaling pathway, and protein folding. We also investigated the potential cardiotoxicity and found a dysregulated subnetwork related to membrane depolarization during action potential, retinoic acid receptor binding, GABA receptor binding, positive regulation of nuclear division, negative regulation of viral genome replication, and negative regulation of the viral life cycle. These may play important roles in the cardiotoxicity of bufadienolide-like chemicals. The results may highlight the potential anticancer mechanism and cardiotoxicity of Chansu, and could also explain the ability of bufadienolide-like chemicals to be used as hormones and anticancer and vasoprotectives agents. MDPI 2019-01-14 /pmc/articles/PMC6357202/ /pubmed/30646630 http://dx.doi.org/10.3390/cancers11010091 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhang, Yingbo Tang, Xiaomin Pang, Yuxin Huang, Luqi Wang, Dan Yuan, Chao Hu, Xuan Qu, Liping The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title | The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title_full | The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title_fullStr | The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title_full_unstemmed | The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title_short | The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis |
title_sort | potential mechanism of bufadienolide-like chemicals on breast cancer via bioinformatics analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357202/ https://www.ncbi.nlm.nih.gov/pubmed/30646630 http://dx.doi.org/10.3390/cancers11010091 |
work_keys_str_mv | AT zhangyingbo thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT tangxiaomin thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT pangyuxin thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT huangluqi thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT wangdan thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT yuanchao thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT huxuan thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT quliping thepotentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT zhangyingbo potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT tangxiaomin potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT pangyuxin potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT huangluqi potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT wangdan potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT yuanchao potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT huxuan potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis AT quliping potentialmechanismofbufadienolidelikechemicalsonbreastcancerviabioinformaticsanalysis |