Cargando…
1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion
Nuclear magnetic resonance (NMR) spectroscopy is a powerful tool for the non-targeted metabolomics of intact biofluids and even living organisms. However, spectral overlap can limit the information that can be obtained from 1D 1H NMR. For example, magnetic susceptibility broadening in living organis...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358932/ https://www.ncbi.nlm.nih.gov/pubmed/30654443 http://dx.doi.org/10.3390/metabo9010016 |
_version_ | 1783392105136128000 |
---|---|
author | Tabatabaei Anaraki, Maryam Bermel, Wolfgang Dutta Majumdar, Rudraksha Soong, Ronald Simpson, Myrna Monnette, Martine Simpson, André J. |
author_facet | Tabatabaei Anaraki, Maryam Bermel, Wolfgang Dutta Majumdar, Rudraksha Soong, Ronald Simpson, Myrna Monnette, Martine Simpson, André J. |
author_sort | Tabatabaei Anaraki, Maryam |
collection | PubMed |
description | Nuclear magnetic resonance (NMR) spectroscopy is a powerful tool for the non-targeted metabolomics of intact biofluids and even living organisms. However, spectral overlap can limit the information that can be obtained from 1D 1H NMR. For example, magnetic susceptibility broadening in living organisms prevents any metabolic information being extracted from solution-state 1D 1H NMR. Conversely, the additional spectral dispersion afforded by 2D 1H-13C NMR allows a wide range of metabolites to be assigned in-vivo in 13C enriched organisms, as well as a greater depth of information for biofluids in general. As such, 2D 1H-13C NMR is becoming more and more popular for routine metabolic screening of very complex samples. Despite this, there are only a very limited number of statistical software packages that can handle 2D NMR datasets for chemometric analysis. In comparison, a wide range of commercial and free tools are available for analysis of 1D NMR datasets. Overtime, it is likely more software solutions will evolve that can handle 2D NMR directly. In the meantime, this application note offers a simple alternative solution that converts 2D 1H-13C Heteronuclear Single Quantum Correlation (HSQC) data into a 1D “spikelet” format that preserves not only the 2D spectral information, but also the 2D dispersion. The approach allows 2D NMR data to be converted into a standard 1D Bruker format that can be read by software packages that can only handle 1D NMR data. This application note uses data from Daphnia magna (water fleas) in-vivo to demonstrate how to generate and interpret the converted 1D spikelet data from 2D datasets, including the code to perform the conversion on Bruker spectrometers. |
format | Online Article Text |
id | pubmed-6358932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-63589322019-02-11 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion Tabatabaei Anaraki, Maryam Bermel, Wolfgang Dutta Majumdar, Rudraksha Soong, Ronald Simpson, Myrna Monnette, Martine Simpson, André J. Metabolites Brief Report Nuclear magnetic resonance (NMR) spectroscopy is a powerful tool for the non-targeted metabolomics of intact biofluids and even living organisms. However, spectral overlap can limit the information that can be obtained from 1D 1H NMR. For example, magnetic susceptibility broadening in living organisms prevents any metabolic information being extracted from solution-state 1D 1H NMR. Conversely, the additional spectral dispersion afforded by 2D 1H-13C NMR allows a wide range of metabolites to be assigned in-vivo in 13C enriched organisms, as well as a greater depth of information for biofluids in general. As such, 2D 1H-13C NMR is becoming more and more popular for routine metabolic screening of very complex samples. Despite this, there are only a very limited number of statistical software packages that can handle 2D NMR datasets for chemometric analysis. In comparison, a wide range of commercial and free tools are available for analysis of 1D NMR datasets. Overtime, it is likely more software solutions will evolve that can handle 2D NMR directly. In the meantime, this application note offers a simple alternative solution that converts 2D 1H-13C Heteronuclear Single Quantum Correlation (HSQC) data into a 1D “spikelet” format that preserves not only the 2D spectral information, but also the 2D dispersion. The approach allows 2D NMR data to be converted into a standard 1D Bruker format that can be read by software packages that can only handle 1D NMR data. This application note uses data from Daphnia magna (water fleas) in-vivo to demonstrate how to generate and interpret the converted 1D spikelet data from 2D datasets, including the code to perform the conversion on Bruker spectrometers. MDPI 2019-01-16 /pmc/articles/PMC6358932/ /pubmed/30654443 http://dx.doi.org/10.3390/metabo9010016 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Brief Report Tabatabaei Anaraki, Maryam Bermel, Wolfgang Dutta Majumdar, Rudraksha Soong, Ronald Simpson, Myrna Monnette, Martine Simpson, André J. 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title | 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title_full | 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title_fullStr | 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title_full_unstemmed | 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title_short | 1D “Spikelet” Projections from Heteronuclear 2D NMR Data—Permitting 1D Chemometrics While Preserving 2D Dispersion |
title_sort | 1d “spikelet” projections from heteronuclear 2d nmr data—permitting 1d chemometrics while preserving 2d dispersion |
topic | Brief Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358932/ https://www.ncbi.nlm.nih.gov/pubmed/30654443 http://dx.doi.org/10.3390/metabo9010016 |
work_keys_str_mv | AT tabatabaeianarakimaryam 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT bermelwolfgang 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT duttamajumdarrudraksha 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT soongronald 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT simpsonmyrna 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT monnettemartine 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion AT simpsonandrej 1dspikeletprojectionsfromheteronuclear2dnmrdatapermitting1dchemometricswhilepreserving2ddispersion |