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Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection
In Proton Nuclear Magnetic Resonance ((1)H-NMR) spectroscopy, the signals assignment procedure is normally conducted by visual inspection of the spectra, by taking advantage of the innate predisposition of human eye for pattern recognition. In the case of untargeted metabolomics investigations on fo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359365/ https://www.ncbi.nlm.nih.gov/pubmed/30650532 http://dx.doi.org/10.3390/metabo9010015 |
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author | Zhu, Chenglin Vitali, Beatrice Donders, Gilbert Parolin, Carola Li, Yan Laghi, Luca |
author_facet | Zhu, Chenglin Vitali, Beatrice Donders, Gilbert Parolin, Carola Li, Yan Laghi, Luca |
author_sort | Zhu, Chenglin |
collection | PubMed |
description | In Proton Nuclear Magnetic Resonance ((1)H-NMR) spectroscopy, the signals assignment procedure is normally conducted by visual inspection of the spectra, by taking advantage of the innate predisposition of human eye for pattern recognition. In the case of untargeted metabolomics investigations on food and body fluids, the complexity of the spectra may lead the user to overlook signals, independently from their biological relevance. Here, we describe a four steps procedure that is designed to guide signals assignment task by visual inspection. The procedure can be employed whenever an experimental plan allows for the application of a univariate statistical analysis on a point-by-point basis, which is commonly the case. By comparing, as a proof of concept, (1)H-NMR spectra of vaginal fluids of healthy and bacterial vaginosis (BV) affected women, we show that the procedure is also readily usable by non-experts in three particularly challenging cases: overlapping multiplets, poorly aligned signals, and signals with very poor signal-to-noise ratio. The paper is accompanied by the necessary codes and examples written in R computational language to allow the interested user gaining a hands-on impression of the procedure’s strengths and weaknesses. |
format | Online Article Text |
id | pubmed-6359365 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-63593652019-02-11 Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection Zhu, Chenglin Vitali, Beatrice Donders, Gilbert Parolin, Carola Li, Yan Laghi, Luca Metabolites Article In Proton Nuclear Magnetic Resonance ((1)H-NMR) spectroscopy, the signals assignment procedure is normally conducted by visual inspection of the spectra, by taking advantage of the innate predisposition of human eye for pattern recognition. In the case of untargeted metabolomics investigations on food and body fluids, the complexity of the spectra may lead the user to overlook signals, independently from their biological relevance. Here, we describe a four steps procedure that is designed to guide signals assignment task by visual inspection. The procedure can be employed whenever an experimental plan allows for the application of a univariate statistical analysis on a point-by-point basis, which is commonly the case. By comparing, as a proof of concept, (1)H-NMR spectra of vaginal fluids of healthy and bacterial vaginosis (BV) affected women, we show that the procedure is also readily usable by non-experts in three particularly challenging cases: overlapping multiplets, poorly aligned signals, and signals with very poor signal-to-noise ratio. The paper is accompanied by the necessary codes and examples written in R computational language to allow the interested user gaining a hands-on impression of the procedure’s strengths and weaknesses. MDPI 2019-01-15 /pmc/articles/PMC6359365/ /pubmed/30650532 http://dx.doi.org/10.3390/metabo9010015 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhu, Chenglin Vitali, Beatrice Donders, Gilbert Parolin, Carola Li, Yan Laghi, Luca Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title | Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title_full | Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title_fullStr | Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title_full_unstemmed | Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title_short | Univariate Statistical Analysis as a Guide to (1)H-NMR Spectra Signal Assignment by Visual Inspection |
title_sort | univariate statistical analysis as a guide to (1)h-nmr spectra signal assignment by visual inspection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359365/ https://www.ncbi.nlm.nih.gov/pubmed/30650532 http://dx.doi.org/10.3390/metabo9010015 |
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