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Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons
The crystal structure of sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7) or [NaRb(C(6)H(6)O(7))](n), has been solved and refined using laboratory powder X-ray diffraction data, and optimized using density functional techniques. This compound is isostructural to NaKHC(6)H(5)O(7). The Na atom is s...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362649/ https://www.ncbi.nlm.nih.gov/pubmed/30800455 http://dx.doi.org/10.1107/S205698901900063X |
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author | Cigler, Andrew J. Kaduk, James A. |
author_facet | Cigler, Andrew J. Kaduk, James A. |
author_sort | Cigler, Andrew J. |
collection | PubMed |
description | The crystal structure of sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7) or [NaRb(C(6)H(6)O(7))](n), has been solved and refined using laboratory powder X-ray diffraction data, and optimized using density functional techniques. This compound is isostructural to NaKHC(6)H(5)O(7). The Na atom is six-coordinate, with a bond-valence sum of 1.16. The Rb atom is eight-coordinate, with a bond-valence sum of 1.17. The distorted [NaO(6)] octahedra share edges to form chains along the a-axis direction. The irregular [RbO(8)] coordination polyhedra share edges with the [NaO(6)] octahedra on either side of the chain, and share corners with other Rb atoms, resulting in triple chains along the a-axis direction. The most prominent feature of the structure is the chain along [111] of very short, very strong hydrogen bonds; the O⋯O distances are 2.426 and 2.398 Å. The Mulliken overlap populations in these hydrogen bonds are 0.140 and 0.143 electrons, which correspond to hydrogen-bond energies of about 20.3 kcal mol(−1). The crystal structure of sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7) or [NaCs(C(6)H(6)O(7))](n), has also been solved and refined using laboratory powder X-ray diffraction data, and optimized using density functional techniques. The Na atom is six-coordinate, with a bond-valence sum of 1.15. The Cs atom is eight-coordinate, with a bond-valence sum of 0.97. The distorted trigonal–prismatic [NaO(6)] coordination polyhedra share edges to form zigzag chains along the b-axis direction. The irregular [CsO(8)] coordination polyhedra share edges with the [NaO(6)] polyhedra to form layers parallel to the (101) plane, unlike the isolated chains in NaKHC(6)H(5)O(7) and NaRbHC(6)H(5)O(7). A prominent feature of the structure is the chain along [100] of very short, very strong O—H⋯O hydrogen bonds; the refined O⋯O distances are 2.398 and 2.159 Å, and the optimized distances are 2.398 and 2.347 Å. The Mulliken overlap populations in these hydrogen bonds are 0.143 and 0.133 electrons, which correspond to hydrogen-bond energies about 20.3 kcal mol(−1). |
format | Online Article Text |
id | pubmed-6362649 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-63626492019-02-22 Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons Cigler, Andrew J. Kaduk, James A. Acta Crystallogr E Crystallogr Commun Research Communications The crystal structure of sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7) or [NaRb(C(6)H(6)O(7))](n), has been solved and refined using laboratory powder X-ray diffraction data, and optimized using density functional techniques. This compound is isostructural to NaKHC(6)H(5)O(7). The Na atom is six-coordinate, with a bond-valence sum of 1.16. The Rb atom is eight-coordinate, with a bond-valence sum of 1.17. The distorted [NaO(6)] octahedra share edges to form chains along the a-axis direction. The irregular [RbO(8)] coordination polyhedra share edges with the [NaO(6)] octahedra on either side of the chain, and share corners with other Rb atoms, resulting in triple chains along the a-axis direction. The most prominent feature of the structure is the chain along [111] of very short, very strong hydrogen bonds; the O⋯O distances are 2.426 and 2.398 Å. The Mulliken overlap populations in these hydrogen bonds are 0.140 and 0.143 electrons, which correspond to hydrogen-bond energies of about 20.3 kcal mol(−1). The crystal structure of sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7) or [NaCs(C(6)H(6)O(7))](n), has also been solved and refined using laboratory powder X-ray diffraction data, and optimized using density functional techniques. The Na atom is six-coordinate, with a bond-valence sum of 1.15. The Cs atom is eight-coordinate, with a bond-valence sum of 0.97. The distorted trigonal–prismatic [NaO(6)] coordination polyhedra share edges to form zigzag chains along the b-axis direction. The irregular [CsO(8)] coordination polyhedra share edges with the [NaO(6)] polyhedra to form layers parallel to the (101) plane, unlike the isolated chains in NaKHC(6)H(5)O(7) and NaRbHC(6)H(5)O(7). A prominent feature of the structure is the chain along [100] of very short, very strong O—H⋯O hydrogen bonds; the refined O⋯O distances are 2.398 and 2.159 Å, and the optimized distances are 2.398 and 2.347 Å. The Mulliken overlap populations in these hydrogen bonds are 0.143 and 0.133 electrons, which correspond to hydrogen-bond energies about 20.3 kcal mol(−1). International Union of Crystallography 2019-01-18 /pmc/articles/PMC6362649/ /pubmed/30800455 http://dx.doi.org/10.1107/S205698901900063X Text en © Cigler and Kaduk 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Cigler, Andrew J. Kaduk, James A. Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title | Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title_full | Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title_fullStr | Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title_full_unstemmed | Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title_short | Sodium rubidium hydrogen citrate, NaRbHC(6)H(5)O(7), and sodium caesium hydrogen citrate, NaCsHC(6)H(5)O(7): crystal structures and DFT comparisons |
title_sort | sodium rubidium hydrogen citrate, narbhc(6)h(5)o(7), and sodium caesium hydrogen citrate, nacshc(6)h(5)o(7): crystal structures and dft comparisons |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362649/ https://www.ncbi.nlm.nih.gov/pubmed/30800455 http://dx.doi.org/10.1107/S205698901900063X |
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