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RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls

Coding and long non-coding RNA (lncRNA) metabolism is now revealing its crucial role in Amyotrophic Lateral Sclerosis (ALS) pathogenesis. In this work, we present a dataset obtained via Illumina RNA-seq analysis on Peripheral Blood Mononuclear Cells (PBMCs) from sporadic and mutated ALS patients (mu...

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Autores principales: Zucca, Susanna, Gagliardi, Stella, Pandini, Cecilia, Diamanti, Luca, Bordoni, Matteo, Sproviero, Daisy, Arigoni, Maddalena, Olivero, Martina, Pansarasa, Orietta, Ceroni, Mauro, Calogero, Raffaele, Cereda, Cristina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362931/
https://www.ncbi.nlm.nih.gov/pubmed/30720798
http://dx.doi.org/10.1038/sdata.2019.6
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author Zucca, Susanna
Gagliardi, Stella
Pandini, Cecilia
Diamanti, Luca
Bordoni, Matteo
Sproviero, Daisy
Arigoni, Maddalena
Olivero, Martina
Pansarasa, Orietta
Ceroni, Mauro
Calogero, Raffaele
Cereda, Cristina
author_facet Zucca, Susanna
Gagliardi, Stella
Pandini, Cecilia
Diamanti, Luca
Bordoni, Matteo
Sproviero, Daisy
Arigoni, Maddalena
Olivero, Martina
Pansarasa, Orietta
Ceroni, Mauro
Calogero, Raffaele
Cereda, Cristina
author_sort Zucca, Susanna
collection PubMed
description Coding and long non-coding RNA (lncRNA) metabolism is now revealing its crucial role in Amyotrophic Lateral Sclerosis (ALS) pathogenesis. In this work, we present a dataset obtained via Illumina RNA-seq analysis on Peripheral Blood Mononuclear Cells (PBMCs) from sporadic and mutated ALS patients (mutations in FUS, TARDBP, SOD1 and VCP genes) and healthy controls. This dataset allows the whole-transcriptome characterization of PBMCs content, both in terms of coding and non-coding RNAs, in order to compare the disease state to the healthy controls, both for sporadic patients and for mutated patients. Our dataset is a starting point for the omni-comprehensive analysis of coding and lncRNAs, from an easy to withdraw, manage and store tissue that shows to be a suitable model for RNA profiling in ALS.
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spelling pubmed-63629312019-02-06 RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls Zucca, Susanna Gagliardi, Stella Pandini, Cecilia Diamanti, Luca Bordoni, Matteo Sproviero, Daisy Arigoni, Maddalena Olivero, Martina Pansarasa, Orietta Ceroni, Mauro Calogero, Raffaele Cereda, Cristina Sci Data Data Descriptor Coding and long non-coding RNA (lncRNA) metabolism is now revealing its crucial role in Amyotrophic Lateral Sclerosis (ALS) pathogenesis. In this work, we present a dataset obtained via Illumina RNA-seq analysis on Peripheral Blood Mononuclear Cells (PBMCs) from sporadic and mutated ALS patients (mutations in FUS, TARDBP, SOD1 and VCP genes) and healthy controls. This dataset allows the whole-transcriptome characterization of PBMCs content, both in terms of coding and non-coding RNAs, in order to compare the disease state to the healthy controls, both for sporadic patients and for mutated patients. Our dataset is a starting point for the omni-comprehensive analysis of coding and lncRNAs, from an easy to withdraw, manage and store tissue that shows to be a suitable model for RNA profiling in ALS. Nature Publishing Group 2019-02-05 /pmc/articles/PMC6362931/ /pubmed/30720798 http://dx.doi.org/10.1038/sdata.2019.6 Text en Copyright © 2019, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Zucca, Susanna
Gagliardi, Stella
Pandini, Cecilia
Diamanti, Luca
Bordoni, Matteo
Sproviero, Daisy
Arigoni, Maddalena
Olivero, Martina
Pansarasa, Orietta
Ceroni, Mauro
Calogero, Raffaele
Cereda, Cristina
RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title_full RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title_fullStr RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title_full_unstemmed RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title_short RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
title_sort rna-seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362931/
https://www.ncbi.nlm.nih.gov/pubmed/30720798
http://dx.doi.org/10.1038/sdata.2019.6
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