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AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 in...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364040/ https://www.ncbi.nlm.nih.gov/pubmed/30472416 http://dx.doi.org/10.1016/j.gpb.2018.05.002 |
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author | Feng, Qidi Lu, Dongsheng Xu, Shuhua |
author_facet | Feng, Qidi Lu, Dongsheng Xu, Shuhua |
author_sort | Feng, Qidi |
collection | PubMed |
description | Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 individuals, it is usually challenging to present the ancestry composition in a traditional way using a rectangular graph. To address this issue, we developed a program, AncestryPainter, which can illustrate the ancestry composition of populations and individuals with a rounded and nice-looking graph to save space. Individuals are depicted as length-fixed bars partitioned into colored segments representing different ancestries, and the population of interest can be highlighted as a pie chart in the center of the circle plot. In addition, AncestryPainter can also be applied to display personal ancestry in a way similar to that for displaying population ancestry. AncestryPainter is publicly available at http://www.picb.ac.cn/PGG/resource.php. |
format | Online Article Text |
id | pubmed-6364040 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-63640402019-02-15 AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals Feng, Qidi Lu, Dongsheng Xu, Shuhua Genomics Proteomics Bioinformatics Application Note Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 individuals, it is usually challenging to present the ancestry composition in a traditional way using a rectangular graph. To address this issue, we developed a program, AncestryPainter, which can illustrate the ancestry composition of populations and individuals with a rounded and nice-looking graph to save space. Individuals are depicted as length-fixed bars partitioned into colored segments representing different ancestries, and the population of interest can be highlighted as a pie chart in the center of the circle plot. In addition, AncestryPainter can also be applied to display personal ancestry in a way similar to that for displaying population ancestry. AncestryPainter is publicly available at http://www.picb.ac.cn/PGG/resource.php. Elsevier 2018-10 2018-11-22 /pmc/articles/PMC6364040/ /pubmed/30472416 http://dx.doi.org/10.1016/j.gpb.2018.05.002 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Application Note Feng, Qidi Lu, Dongsheng Xu, Shuhua AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title | AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title_full | AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title_fullStr | AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title_full_unstemmed | AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title_short | AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals |
title_sort | ancestrypainter: a graphic program for displaying ancestry composition of populations and individuals |
topic | Application Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364040/ https://www.ncbi.nlm.nih.gov/pubmed/30472416 http://dx.doi.org/10.1016/j.gpb.2018.05.002 |
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