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AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals

Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 in...

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Detalles Bibliográficos
Autores principales: Feng, Qidi, Lu, Dongsheng, Xu, Shuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364040/
https://www.ncbi.nlm.nih.gov/pubmed/30472416
http://dx.doi.org/10.1016/j.gpb.2018.05.002
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author Feng, Qidi
Lu, Dongsheng
Xu, Shuhua
author_facet Feng, Qidi
Lu, Dongsheng
Xu, Shuhua
author_sort Feng, Qidi
collection PubMed
description Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 individuals, it is usually challenging to present the ancestry composition in a traditional way using a rectangular graph. To address this issue, we developed a program, AncestryPainter, which can illustrate the ancestry composition of populations and individuals with a rounded and nice-looking graph to save space. Individuals are depicted as length-fixed bars partitioned into colored segments representing different ancestries, and the population of interest can be highlighted as a pie chart in the center of the circle plot. In addition, AncestryPainter can also be applied to display personal ancestry in a way similar to that for displaying population ancestry. AncestryPainter is publicly available at http://www.picb.ac.cn/PGG/resource.php.
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spelling pubmed-63640402019-02-15 AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals Feng, Qidi Lu, Dongsheng Xu, Shuhua Genomics Proteomics Bioinformatics Application Note Ancestry composition of populations and individuals has been extensively investigated in recent years due to advances in the genotyping and sequencing technologies. As the number of populations and individuals used for ancestry inference increases remarkably, say more than 100 populations or 1000 individuals, it is usually challenging to present the ancestry composition in a traditional way using a rectangular graph. To address this issue, we developed a program, AncestryPainter, which can illustrate the ancestry composition of populations and individuals with a rounded and nice-looking graph to save space. Individuals are depicted as length-fixed bars partitioned into colored segments representing different ancestries, and the population of interest can be highlighted as a pie chart in the center of the circle plot. In addition, AncestryPainter can also be applied to display personal ancestry in a way similar to that for displaying population ancestry. AncestryPainter is publicly available at http://www.picb.ac.cn/PGG/resource.php. Elsevier 2018-10 2018-11-22 /pmc/articles/PMC6364040/ /pubmed/30472416 http://dx.doi.org/10.1016/j.gpb.2018.05.002 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Application Note
Feng, Qidi
Lu, Dongsheng
Xu, Shuhua
AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title_full AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title_fullStr AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title_full_unstemmed AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title_short AncestryPainter: A Graphic Program for Displaying Ancestry Composition of Populations and Individuals
title_sort ancestrypainter: a graphic program for displaying ancestry composition of populations and individuals
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364040/
https://www.ncbi.nlm.nih.gov/pubmed/30472416
http://dx.doi.org/10.1016/j.gpb.2018.05.002
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