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Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on r...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364637/ https://www.ncbi.nlm.nih.gov/pubmed/30958174 http://dx.doi.org/10.1098/rsif.2018.0572 |
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author | Thomson, W. Jabbari, S. Taylor, A. E. Arlt, W. Smith, D. J. |
author_facet | Thomson, W. Jabbari, S. Taylor, A. E. Arlt, W. Smith, D. J. |
author_sort | Thomson, W. |
collection | PubMed |
description | We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on real biological data from the fields of metabolomics and genomics. The prior allows the use of classical statistical models, which are easily interpretable and well known to applied scientists, but performs comparably to common machine learning methods in terms of generalizability to previously unseen data. |
format | Online Article Text |
id | pubmed-6364637 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-63646372019-02-13 Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior Thomson, W. Jabbari, S. Taylor, A. E. Arlt, W. Smith, D. J. J R Soc Interface Life Sciences–Mathematics interface We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on real biological data from the fields of metabolomics and genomics. The prior allows the use of classical statistical models, which are easily interpretable and well known to applied scientists, but performs comparably to common machine learning methods in terms of generalizability to previously unseen data. The Royal Society 2019-01 2019-01-02 /pmc/articles/PMC6364637/ /pubmed/30958174 http://dx.doi.org/10.1098/rsif.2018.0572 Text en © 2019 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Thomson, W. Jabbari, S. Taylor, A. E. Arlt, W. Smith, D. J. Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title | Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title_full | Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title_fullStr | Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title_full_unstemmed | Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title_short | Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
title_sort | simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364637/ https://www.ncbi.nlm.nih.gov/pubmed/30958174 http://dx.doi.org/10.1098/rsif.2018.0572 |
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