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Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior

We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on r...

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Detalles Bibliográficos
Autores principales: Thomson, W., Jabbari, S., Taylor, A. E., Arlt, W., Smith, D. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364637/
https://www.ncbi.nlm.nih.gov/pubmed/30958174
http://dx.doi.org/10.1098/rsif.2018.0572
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author Thomson, W.
Jabbari, S.
Taylor, A. E.
Arlt, W.
Smith, D. J.
author_facet Thomson, W.
Jabbari, S.
Taylor, A. E.
Arlt, W.
Smith, D. J.
author_sort Thomson, W.
collection PubMed
description We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on real biological data from the fields of metabolomics and genomics. The prior allows the use of classical statistical models, which are easily interpretable and well known to applied scientists, but performs comparably to common machine learning methods in terms of generalizability to previously unseen data.
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spelling pubmed-63646372019-02-13 Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior Thomson, W. Jabbari, S. Taylor, A. E. Arlt, W. Smith, D. J. J R Soc Interface Life Sciences–Mathematics interface We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on real biological data from the fields of metabolomics and genomics. The prior allows the use of classical statistical models, which are easily interpretable and well known to applied scientists, but performs comparably to common machine learning methods in terms of generalizability to previously unseen data. The Royal Society 2019-01 2019-01-02 /pmc/articles/PMC6364637/ /pubmed/30958174 http://dx.doi.org/10.1098/rsif.2018.0572 Text en © 2019 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Thomson, W.
Jabbari, S.
Taylor, A. E.
Arlt, W.
Smith, D. J.
Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title_full Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title_fullStr Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title_full_unstemmed Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title_short Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
title_sort simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364637/
https://www.ncbi.nlm.nih.gov/pubmed/30958174
http://dx.doi.org/10.1098/rsif.2018.0572
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