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Multi-channel framelet denoising of diffusion-weighted images

Diffusion MRI derives its contrast from MR signal attenuation induced by the movement of water molecules in microstructural environments. Associated with the signal attenuation is the reduction of signal-to-noise ratio (SNR). Methods based on total variation (TV) have shown superior performance in i...

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Autores principales: Chen, Geng, Zhang, Jian, Zhang, Yong, Dong, Bin, Shen, Dinggang, Yap, Pew-Thian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364918/
https://www.ncbi.nlm.nih.gov/pubmed/30726257
http://dx.doi.org/10.1371/journal.pone.0211621
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author Chen, Geng
Zhang, Jian
Zhang, Yong
Dong, Bin
Shen, Dinggang
Yap, Pew-Thian
author_facet Chen, Geng
Zhang, Jian
Zhang, Yong
Dong, Bin
Shen, Dinggang
Yap, Pew-Thian
author_sort Chen, Geng
collection PubMed
description Diffusion MRI derives its contrast from MR signal attenuation induced by the movement of water molecules in microstructural environments. Associated with the signal attenuation is the reduction of signal-to-noise ratio (SNR). Methods based on total variation (TV) have shown superior performance in image noise reduction. However, TV denoising can result in stair-casing effects due to the inherent piecewise-constant assumption. In this paper, we propose a tight wavelet frame based approach for edge-preserving denoising of diffusion-weighted (DW) images. Specifically, we employ the unitary extension principle (UEP) to generate frames that are discrete analogues to differential operators of various orders, which will help avoid stair-casing effects. Instead of denoising each DW image separately, we collaboratively denoise groups of DW images acquired with adjacent gradient directions. In addition, we introduce a very efficient method for solving an ℓ(0) denoising problem that involves only thresholding and solving a trivial inverse problem. We demonstrate the effectiveness of our method qualitatively and quantitatively using synthetic and real data.
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spelling pubmed-63649182019-02-22 Multi-channel framelet denoising of diffusion-weighted images Chen, Geng Zhang, Jian Zhang, Yong Dong, Bin Shen, Dinggang Yap, Pew-Thian PLoS One Research Article Diffusion MRI derives its contrast from MR signal attenuation induced by the movement of water molecules in microstructural environments. Associated with the signal attenuation is the reduction of signal-to-noise ratio (SNR). Methods based on total variation (TV) have shown superior performance in image noise reduction. However, TV denoising can result in stair-casing effects due to the inherent piecewise-constant assumption. In this paper, we propose a tight wavelet frame based approach for edge-preserving denoising of diffusion-weighted (DW) images. Specifically, we employ the unitary extension principle (UEP) to generate frames that are discrete analogues to differential operators of various orders, which will help avoid stair-casing effects. Instead of denoising each DW image separately, we collaboratively denoise groups of DW images acquired with adjacent gradient directions. In addition, we introduce a very efficient method for solving an ℓ(0) denoising problem that involves only thresholding and solving a trivial inverse problem. We demonstrate the effectiveness of our method qualitatively and quantitatively using synthetic and real data. Public Library of Science 2019-02-06 /pmc/articles/PMC6364918/ /pubmed/30726257 http://dx.doi.org/10.1371/journal.pone.0211621 Text en © 2019 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chen, Geng
Zhang, Jian
Zhang, Yong
Dong, Bin
Shen, Dinggang
Yap, Pew-Thian
Multi-channel framelet denoising of diffusion-weighted images
title Multi-channel framelet denoising of diffusion-weighted images
title_full Multi-channel framelet denoising of diffusion-weighted images
title_fullStr Multi-channel framelet denoising of diffusion-weighted images
title_full_unstemmed Multi-channel framelet denoising of diffusion-weighted images
title_short Multi-channel framelet denoising of diffusion-weighted images
title_sort multi-channel framelet denoising of diffusion-weighted images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364918/
https://www.ncbi.nlm.nih.gov/pubmed/30726257
http://dx.doi.org/10.1371/journal.pone.0211621
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