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COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity
PURPOSE: PLEKHA7 and COL11A1 were genotyped for single-nucleotide polymorphisms (SNPs) to investigate the possible association of these two genes with primary angle-closure glaucoma (PACG) and disease severity. METHOD: A total of 51 PACG cases and 51 normal controls were recruited. Twelve SNPs in th...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369458/ https://www.ncbi.nlm.nih.gov/pubmed/30809385 http://dx.doi.org/10.1155/2019/2604386 |
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author | Wan, Yani Li, Shengjie Gao, Yanting Tang, Li Cao, Wenjun Sun, Xinghuai |
author_facet | Wan, Yani Li, Shengjie Gao, Yanting Tang, Li Cao, Wenjun Sun, Xinghuai |
author_sort | Wan, Yani |
collection | PubMed |
description | PURPOSE: PLEKHA7 and COL11A1 were genotyped for single-nucleotide polymorphisms (SNPs) to investigate the possible association of these two genes with primary angle-closure glaucoma (PACG) and disease severity. METHOD: A total of 51 PACG cases and 51 normal controls were recruited. Twelve SNPs in the PLEKHA7 (rs216489, rs1027617, rs366590, rs11024060, rs6486330, rs11024097, and rs11024102) and COL11A1 (rs1676484, rs3753841, rs12138977, rs2126642, and rs2622848) genes were genotyped by direct Sanger sequencing. Distributions of allele frequencies and genotype frequencies in cases and controls, as well as in mild, moderate, and severe subgroups, were compared based on mean defect (MD ≤ 6.00 dB, 6 dB < MD ≤ 12 dB, and MD > 12 dB were considered mild, moderate, and severe, respectively). Independent Student's t-tests and chi-square tests were used to compare characteristics of PACG cases and controls. Chi-square tests were used to compare the distribution of allele frequencies in cases and controls and in MD-based subgroups with various degrees of glaucoma severity. Binary logistic regression was used to compare the distribution of genotype frequencies and calculate odds ratios (OR) with confidence intervals (CI). RESULT: Three of the 12 SNPs in COL11A1, rs1676486 (P=0.026, OR = 2.089, 95% CI = 1.092–3.996), rs3753841 (P=0.036, OR = 1.886, 95% CI = 1.038–3.426), and rs12138977 (P=0.024, OR = 2.133, 95% CI = 1.104–4.123) were found to have a significant association with PACG. Furthermore, in the subgroup analysis, rs1676486 (P=0.018, OR = 2.416, 95% CI = 1.284–4.544; P=0.011, OR = 2.119, 95% CI = 1.204–3.729), rs12138977 (P=0.009, OR = 2.158, 95% CI = 1.287–3.618; P=0.006, OR = 1.962, 95% CI = 1.239–3.106), and rs3753841 (P=0.007, OR = 2.550, 95% CI = 1.344–4.839) showed statistically significant differences between moderate/severe groups and controls. CONCLUSION: Our data suggested that COL11A1 rs1676484, rs3753841, and rs12138977 polymorphisms may be of value for further study as potential gene-dependent risk factors for developing PACG. Moreover, COL11A1 rs1676484 and rs12138977 polymorphisms might be associated with PACG disease severity. |
format | Online Article Text |
id | pubmed-6369458 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-63694582019-02-26 COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity Wan, Yani Li, Shengjie Gao, Yanting Tang, Li Cao, Wenjun Sun, Xinghuai J Ophthalmol Research Article PURPOSE: PLEKHA7 and COL11A1 were genotyped for single-nucleotide polymorphisms (SNPs) to investigate the possible association of these two genes with primary angle-closure glaucoma (PACG) and disease severity. METHOD: A total of 51 PACG cases and 51 normal controls were recruited. Twelve SNPs in the PLEKHA7 (rs216489, rs1027617, rs366590, rs11024060, rs6486330, rs11024097, and rs11024102) and COL11A1 (rs1676484, rs3753841, rs12138977, rs2126642, and rs2622848) genes were genotyped by direct Sanger sequencing. Distributions of allele frequencies and genotype frequencies in cases and controls, as well as in mild, moderate, and severe subgroups, were compared based on mean defect (MD ≤ 6.00 dB, 6 dB < MD ≤ 12 dB, and MD > 12 dB were considered mild, moderate, and severe, respectively). Independent Student's t-tests and chi-square tests were used to compare characteristics of PACG cases and controls. Chi-square tests were used to compare the distribution of allele frequencies in cases and controls and in MD-based subgroups with various degrees of glaucoma severity. Binary logistic regression was used to compare the distribution of genotype frequencies and calculate odds ratios (OR) with confidence intervals (CI). RESULT: Three of the 12 SNPs in COL11A1, rs1676486 (P=0.026, OR = 2.089, 95% CI = 1.092–3.996), rs3753841 (P=0.036, OR = 1.886, 95% CI = 1.038–3.426), and rs12138977 (P=0.024, OR = 2.133, 95% CI = 1.104–4.123) were found to have a significant association with PACG. Furthermore, in the subgroup analysis, rs1676486 (P=0.018, OR = 2.416, 95% CI = 1.284–4.544; P=0.011, OR = 2.119, 95% CI = 1.204–3.729), rs12138977 (P=0.009, OR = 2.158, 95% CI = 1.287–3.618; P=0.006, OR = 1.962, 95% CI = 1.239–3.106), and rs3753841 (P=0.007, OR = 2.550, 95% CI = 1.344–4.839) showed statistically significant differences between moderate/severe groups and controls. CONCLUSION: Our data suggested that COL11A1 rs1676484, rs3753841, and rs12138977 polymorphisms may be of value for further study as potential gene-dependent risk factors for developing PACG. Moreover, COL11A1 rs1676484 and rs12138977 polymorphisms might be associated with PACG disease severity. Hindawi 2019-01-27 /pmc/articles/PMC6369458/ /pubmed/30809385 http://dx.doi.org/10.1155/2019/2604386 Text en Copyright © 2019 Yani Wan et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wan, Yani Li, Shengjie Gao, Yanting Tang, Li Cao, Wenjun Sun, Xinghuai COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title | COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title_full | COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title_fullStr | COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title_full_unstemmed | COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title_short | COL11A1 Polymorphisms Are Associated with Primary Angle-Closure Glaucoma Severity |
title_sort | col11a1 polymorphisms are associated with primary angle-closure glaucoma severity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369458/ https://www.ncbi.nlm.nih.gov/pubmed/30809385 http://dx.doi.org/10.1155/2019/2604386 |
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