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Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model

Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on...

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Detalles Bibliográficos
Autor principal: Inoue, Kentaro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372148/
https://www.ncbi.nlm.nih.gov/pubmed/30753191
http://dx.doi.org/10.1371/journal.pone.0211654
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author Inoue, Kentaro
author_facet Inoue, Kentaro
author_sort Inoue, Kentaro
collection PubMed
description Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on only a certain parameter set, even though diverse parameter sets that can recapitulate experiments may exist. In this study, we performed sensitivity analysis that investigates the features in a system considering the reproducible and multiple candidate values of the model parameters to experiments. The results showed that although different reproducible model parameter values have absolute differences with respect to sensitivity strengths, specific trends of some relative sensitivity strengths exist between reactions regardless of parameter values. It is suggested that (i) network structure considerably influences the relative sensitivity strength and (ii) one might be able to predict relative sensitivity strengths specified in the parameter sets employing only one of the reproducible parameter sets.
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spelling pubmed-63721482019-03-01 Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model Inoue, Kentaro PLoS One Research Article Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on only a certain parameter set, even though diverse parameter sets that can recapitulate experiments may exist. In this study, we performed sensitivity analysis that investigates the features in a system considering the reproducible and multiple candidate values of the model parameters to experiments. The results showed that although different reproducible model parameter values have absolute differences with respect to sensitivity strengths, specific trends of some relative sensitivity strengths exist between reactions regardless of parameter values. It is suggested that (i) network structure considerably influences the relative sensitivity strength and (ii) one might be able to predict relative sensitivity strengths specified in the parameter sets employing only one of the reproducible parameter sets. Public Library of Science 2019-02-12 /pmc/articles/PMC6372148/ /pubmed/30753191 http://dx.doi.org/10.1371/journal.pone.0211654 Text en © 2019 Kentaro Inoue http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Inoue, Kentaro
Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title_full Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title_fullStr Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title_full_unstemmed Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title_short Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
title_sort sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372148/
https://www.ncbi.nlm.nih.gov/pubmed/30753191
http://dx.doi.org/10.1371/journal.pone.0211654
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