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Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model
Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372148/ https://www.ncbi.nlm.nih.gov/pubmed/30753191 http://dx.doi.org/10.1371/journal.pone.0211654 |
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author | Inoue, Kentaro |
author_facet | Inoue, Kentaro |
author_sort | Inoue, Kentaro |
collection | PubMed |
description | Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on only a certain parameter set, even though diverse parameter sets that can recapitulate experiments may exist. In this study, we performed sensitivity analysis that investigates the features in a system considering the reproducible and multiple candidate values of the model parameters to experiments. The results showed that although different reproducible model parameter values have absolute differences with respect to sensitivity strengths, specific trends of some relative sensitivity strengths exist between reactions regardless of parameter values. It is suggested that (i) network structure considerably influences the relative sensitivity strength and (ii) one might be able to predict relative sensitivity strengths specified in the parameter sets employing only one of the reproducible parameter sets. |
format | Online Article Text |
id | pubmed-6372148 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-63721482019-03-01 Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model Inoue, Kentaro PLoS One Research Article Mathematical models for signaling pathways are helpful for understanding molecular mechanism in the pathways and predicting dynamic behavior of the signal activity. To analyze the robustness of such models, local sensitivity analysis has been implemented. However, such analysis primarily focuses on only a certain parameter set, even though diverse parameter sets that can recapitulate experiments may exist. In this study, we performed sensitivity analysis that investigates the features in a system considering the reproducible and multiple candidate values of the model parameters to experiments. The results showed that although different reproducible model parameter values have absolute differences with respect to sensitivity strengths, specific trends of some relative sensitivity strengths exist between reactions regardless of parameter values. It is suggested that (i) network structure considerably influences the relative sensitivity strength and (ii) one might be able to predict relative sensitivity strengths specified in the parameter sets employing only one of the reproducible parameter sets. Public Library of Science 2019-02-12 /pmc/articles/PMC6372148/ /pubmed/30753191 http://dx.doi.org/10.1371/journal.pone.0211654 Text en © 2019 Kentaro Inoue http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Inoue, Kentaro Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title | Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title_full | Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title_fullStr | Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title_full_unstemmed | Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title_short | Sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
title_sort | sensitivity analysis for reproducible candidate values of model parameters in signaling hub model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372148/ https://www.ncbi.nlm.nih.gov/pubmed/30753191 http://dx.doi.org/10.1371/journal.pone.0211654 |
work_keys_str_mv | AT inouekentaro sensitivityanalysisforreproduciblecandidatevaluesofmodelparametersinsignalinghubmodel |