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BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis

OBJECTIVES: Histopathological tissue analysis by a pathologist determines the diagnosis and prognosis of most tumors, such as breast cancer. To estimate the aggressiveness of cancer, a pathologist evaluates the microscopic appearance of a biopsied tissue sample based on morphological features which...

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Autores principales: Aksac, Alper, Demetrick, Douglas J., Ozyer, Tansel, Alhajj, Reda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373078/
https://www.ncbi.nlm.nih.gov/pubmed/30755250
http://dx.doi.org/10.1186/s13104-019-4121-7
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author Aksac, Alper
Demetrick, Douglas J.
Ozyer, Tansel
Alhajj, Reda
author_facet Aksac, Alper
Demetrick, Douglas J.
Ozyer, Tansel
Alhajj, Reda
author_sort Aksac, Alper
collection PubMed
description OBJECTIVES: Histopathological tissue analysis by a pathologist determines the diagnosis and prognosis of most tumors, such as breast cancer. To estimate the aggressiveness of cancer, a pathologist evaluates the microscopic appearance of a biopsied tissue sample based on morphological features which have been correlated with patient outcome. DATA DESCRIPTION: This paper introduces a dataset of 162 breast cancer histopathology images, namely the breast cancer histopathological annotation and diagnosis dataset (BreCaHAD) which allows researchers to optimize and evaluate the usefulness of their proposed methods. The dataset includes various malignant cases. The task associated with this dataset is to automatically classify histological structures in these hematoxylin and eosin (H&E) stained images into six classes, namely mitosis, apoptosis, tumor nuclei, non-tumor nuclei, tubule, and non-tubule. By providing this dataset to the biomedical imaging community, we hope to encourage researchers in computer vision, machine learning and medical fields to contribute and develop methods/tools for automatic detection and diagnosis of cancerous regions in breast cancer histology images.
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spelling pubmed-63730782019-02-25 BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis Aksac, Alper Demetrick, Douglas J. Ozyer, Tansel Alhajj, Reda BMC Res Notes Data Note OBJECTIVES: Histopathological tissue analysis by a pathologist determines the diagnosis and prognosis of most tumors, such as breast cancer. To estimate the aggressiveness of cancer, a pathologist evaluates the microscopic appearance of a biopsied tissue sample based on morphological features which have been correlated with patient outcome. DATA DESCRIPTION: This paper introduces a dataset of 162 breast cancer histopathology images, namely the breast cancer histopathological annotation and diagnosis dataset (BreCaHAD) which allows researchers to optimize and evaluate the usefulness of their proposed methods. The dataset includes various malignant cases. The task associated with this dataset is to automatically classify histological structures in these hematoxylin and eosin (H&E) stained images into six classes, namely mitosis, apoptosis, tumor nuclei, non-tumor nuclei, tubule, and non-tubule. By providing this dataset to the biomedical imaging community, we hope to encourage researchers in computer vision, machine learning and medical fields to contribute and develop methods/tools for automatic detection and diagnosis of cancerous regions in breast cancer histology images. BioMed Central 2019-02-12 /pmc/articles/PMC6373078/ /pubmed/30755250 http://dx.doi.org/10.1186/s13104-019-4121-7 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Aksac, Alper
Demetrick, Douglas J.
Ozyer, Tansel
Alhajj, Reda
BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title_full BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title_fullStr BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title_full_unstemmed BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title_short BreCaHAD: a dataset for breast cancer histopathological annotation and diagnosis
title_sort brecahad: a dataset for breast cancer histopathological annotation and diagnosis
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373078/
https://www.ncbi.nlm.nih.gov/pubmed/30755250
http://dx.doi.org/10.1186/s13104-019-4121-7
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