Cargando…
Discovery of three RNA viruses using ant transcriptomic datasets
Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identif...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Vienna
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373249/ https://www.ncbi.nlm.nih.gov/pubmed/30415391 http://dx.doi.org/10.1007/s00705-018-4093-2 |
_version_ | 1783394945232535552 |
---|---|
author | Kleanthous, Eleni Olendraite, Ingrida Lukhovitskaya, Nina I. Firth, Andrew E. |
author_facet | Kleanthous, Eleni Olendraite, Ingrida Lukhovitskaya, Nina I. Firth, Andrew E. |
author_sort | Kleanthous, Eleni |
collection | PubMed |
description | Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identified. The genome sequences were obtained using de novo transcriptome assembly of high-throughput RNA sequencing reads and confirmed by Sanger sequencing. Phylogenetic analysis showed that Formica fusca virus 1 grouped within the family Nyamiviridae, Lasius neglectus virus 2 grouped within the family Rhabdoviridae and Myrmica scabrinodis virus 2 belongs to the family Dicistroviridae. All three viruses are highly divergent from previously sequenced viruses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00705-018-4093-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6373249 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer Vienna |
record_format | MEDLINE/PubMed |
spelling | pubmed-63732492019-03-01 Discovery of three RNA viruses using ant transcriptomic datasets Kleanthous, Eleni Olendraite, Ingrida Lukhovitskaya, Nina I. Firth, Andrew E. Arch Virol Annotated Sequence Record Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identified. The genome sequences were obtained using de novo transcriptome assembly of high-throughput RNA sequencing reads and confirmed by Sanger sequencing. Phylogenetic analysis showed that Formica fusca virus 1 grouped within the family Nyamiviridae, Lasius neglectus virus 2 grouped within the family Rhabdoviridae and Myrmica scabrinodis virus 2 belongs to the family Dicistroviridae. All three viruses are highly divergent from previously sequenced viruses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00705-018-4093-2) contains supplementary material, which is available to authorized users. Springer Vienna 2018-11-10 2019 /pmc/articles/PMC6373249/ /pubmed/30415391 http://dx.doi.org/10.1007/s00705-018-4093-2 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Annotated Sequence Record Kleanthous, Eleni Olendraite, Ingrida Lukhovitskaya, Nina I. Firth, Andrew E. Discovery of three RNA viruses using ant transcriptomic datasets |
title | Discovery of three RNA viruses using ant transcriptomic datasets |
title_full | Discovery of three RNA viruses using ant transcriptomic datasets |
title_fullStr | Discovery of three RNA viruses using ant transcriptomic datasets |
title_full_unstemmed | Discovery of three RNA viruses using ant transcriptomic datasets |
title_short | Discovery of three RNA viruses using ant transcriptomic datasets |
title_sort | discovery of three rna viruses using ant transcriptomic datasets |
topic | Annotated Sequence Record |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373249/ https://www.ncbi.nlm.nih.gov/pubmed/30415391 http://dx.doi.org/10.1007/s00705-018-4093-2 |
work_keys_str_mv | AT kleanthouseleni discoveryofthreernavirusesusinganttranscriptomicdatasets AT olendraiteingrida discoveryofthreernavirusesusinganttranscriptomicdatasets AT lukhovitskayaninai discoveryofthreernavirusesusinganttranscriptomicdatasets AT firthandrewe discoveryofthreernavirusesusinganttranscriptomicdatasets |