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Discovery of three RNA viruses using ant transcriptomic datasets

Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identif...

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Autores principales: Kleanthous, Eleni, Olendraite, Ingrida, Lukhovitskaya, Nina I., Firth, Andrew E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373249/
https://www.ncbi.nlm.nih.gov/pubmed/30415391
http://dx.doi.org/10.1007/s00705-018-4093-2
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author Kleanthous, Eleni
Olendraite, Ingrida
Lukhovitskaya, Nina I.
Firth, Andrew E.
author_facet Kleanthous, Eleni
Olendraite, Ingrida
Lukhovitskaya, Nina I.
Firth, Andrew E.
author_sort Kleanthous, Eleni
collection PubMed
description Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identified. The genome sequences were obtained using de novo transcriptome assembly of high-throughput RNA sequencing reads and confirmed by Sanger sequencing. Phylogenetic analysis showed that Formica fusca virus 1 grouped within the family Nyamiviridae, Lasius neglectus virus 2 grouped within the family Rhabdoviridae and Myrmica scabrinodis virus 2 belongs to the family Dicistroviridae. All three viruses are highly divergent from previously sequenced viruses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00705-018-4093-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-63732492019-03-01 Discovery of three RNA viruses using ant transcriptomic datasets Kleanthous, Eleni Olendraite, Ingrida Lukhovitskaya, Nina I. Firth, Andrew E. Arch Virol Annotated Sequence Record Three novel RNA viruses, named Formica fusca virus 1 (GenBank accession no. MH477287), Lasius neglectus virus 2 (MH477288) and Myrmica scabrinodis virus 2 (MH477289), were discovered in ants collected in Cambridge, UK. The proposed virus names were given based on the hosts in which they were identified. The genome sequences were obtained using de novo transcriptome assembly of high-throughput RNA sequencing reads and confirmed by Sanger sequencing. Phylogenetic analysis showed that Formica fusca virus 1 grouped within the family Nyamiviridae, Lasius neglectus virus 2 grouped within the family Rhabdoviridae and Myrmica scabrinodis virus 2 belongs to the family Dicistroviridae. All three viruses are highly divergent from previously sequenced viruses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00705-018-4093-2) contains supplementary material, which is available to authorized users. Springer Vienna 2018-11-10 2019 /pmc/articles/PMC6373249/ /pubmed/30415391 http://dx.doi.org/10.1007/s00705-018-4093-2 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Annotated Sequence Record
Kleanthous, Eleni
Olendraite, Ingrida
Lukhovitskaya, Nina I.
Firth, Andrew E.
Discovery of three RNA viruses using ant transcriptomic datasets
title Discovery of three RNA viruses using ant transcriptomic datasets
title_full Discovery of three RNA viruses using ant transcriptomic datasets
title_fullStr Discovery of three RNA viruses using ant transcriptomic datasets
title_full_unstemmed Discovery of three RNA viruses using ant transcriptomic datasets
title_short Discovery of three RNA viruses using ant transcriptomic datasets
title_sort discovery of three rna viruses using ant transcriptomic datasets
topic Annotated Sequence Record
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373249/
https://www.ncbi.nlm.nih.gov/pubmed/30415391
http://dx.doi.org/10.1007/s00705-018-4093-2
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