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Plant leaf tooth feature extraction

Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform...

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Detalles Bibliográficos
Autores principales: Wang, Hu, Tian, Di, Li, Chu, Tian, Yan, Zhou, Haoyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373932/
https://www.ncbi.nlm.nih.gov/pubmed/30759085
http://dx.doi.org/10.1371/journal.pone.0204714
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author Wang, Hu
Tian, Di
Li, Chu
Tian, Yan
Zhou, Haoyu
author_facet Wang, Hu
Tian, Di
Li, Chu
Tian, Yan
Zhou, Haoyu
author_sort Wang, Hu
collection PubMed
description Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform standard to compare the accuracies of various feature extraction methods cannot be used. For efficient and automatic retrieval of plant leaves from a leaf database, in this study, we propose an image-based description and measurement of leaf teeth by referring to the leaf structure classification system in botany. First, image preprocessing is carried out to obtain a binary map of plant leaves. Then, corner detection based on the curvature scale-space (CSS) algorithm is used to extract the inflection point from the edges; next, the leaf tooth apex is extracted by screening the convex points; then, according to the definition of the leaf structure, the characteristics of the leaf teeth are described and measured in terms of number of orders of teeth, tooth spacing, number of teeth, sinus shape, and tooth shape. In this manner, data extracted from the algorithm can not only be used to classify plants, but also provide scientific and standardized data to understand the history of plant evolution. Finally, to verify the effectiveness of the extraction method, we used simple linear discriminant analysis and multiclass support vector machine to classify leaves. The results show that the proposed method achieves high accuracy that is superior to that of other methods.
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spelling pubmed-63739322019-03-01 Plant leaf tooth feature extraction Wang, Hu Tian, Di Li, Chu Tian, Yan Zhou, Haoyu PLoS One Research Article Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform standard to compare the accuracies of various feature extraction methods cannot be used. For efficient and automatic retrieval of plant leaves from a leaf database, in this study, we propose an image-based description and measurement of leaf teeth by referring to the leaf structure classification system in botany. First, image preprocessing is carried out to obtain a binary map of plant leaves. Then, corner detection based on the curvature scale-space (CSS) algorithm is used to extract the inflection point from the edges; next, the leaf tooth apex is extracted by screening the convex points; then, according to the definition of the leaf structure, the characteristics of the leaf teeth are described and measured in terms of number of orders of teeth, tooth spacing, number of teeth, sinus shape, and tooth shape. In this manner, data extracted from the algorithm can not only be used to classify plants, but also provide scientific and standardized data to understand the history of plant evolution. Finally, to verify the effectiveness of the extraction method, we used simple linear discriminant analysis and multiclass support vector machine to classify leaves. The results show that the proposed method achieves high accuracy that is superior to that of other methods. Public Library of Science 2019-02-13 /pmc/articles/PMC6373932/ /pubmed/30759085 http://dx.doi.org/10.1371/journal.pone.0204714 Text en © 2019 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wang, Hu
Tian, Di
Li, Chu
Tian, Yan
Zhou, Haoyu
Plant leaf tooth feature extraction
title Plant leaf tooth feature extraction
title_full Plant leaf tooth feature extraction
title_fullStr Plant leaf tooth feature extraction
title_full_unstemmed Plant leaf tooth feature extraction
title_short Plant leaf tooth feature extraction
title_sort plant leaf tooth feature extraction
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373932/
https://www.ncbi.nlm.nih.gov/pubmed/30759085
http://dx.doi.org/10.1371/journal.pone.0204714
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