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Plant leaf tooth feature extraction
Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373932/ https://www.ncbi.nlm.nih.gov/pubmed/30759085 http://dx.doi.org/10.1371/journal.pone.0204714 |
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author | Wang, Hu Tian, Di Li, Chu Tian, Yan Zhou, Haoyu |
author_facet | Wang, Hu Tian, Di Li, Chu Tian, Yan Zhou, Haoyu |
author_sort | Wang, Hu |
collection | PubMed |
description | Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform standard to compare the accuracies of various feature extraction methods cannot be used. For efficient and automatic retrieval of plant leaves from a leaf database, in this study, we propose an image-based description and measurement of leaf teeth by referring to the leaf structure classification system in botany. First, image preprocessing is carried out to obtain a binary map of plant leaves. Then, corner detection based on the curvature scale-space (CSS) algorithm is used to extract the inflection point from the edges; next, the leaf tooth apex is extracted by screening the convex points; then, according to the definition of the leaf structure, the characteristics of the leaf teeth are described and measured in terms of number of orders of teeth, tooth spacing, number of teeth, sinus shape, and tooth shape. In this manner, data extracted from the algorithm can not only be used to classify plants, but also provide scientific and standardized data to understand the history of plant evolution. Finally, to verify the effectiveness of the extraction method, we used simple linear discriminant analysis and multiclass support vector machine to classify leaves. The results show that the proposed method achieves high accuracy that is superior to that of other methods. |
format | Online Article Text |
id | pubmed-6373932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-63739322019-03-01 Plant leaf tooth feature extraction Wang, Hu Tian, Di Li, Chu Tian, Yan Zhou, Haoyu PLoS One Research Article Leaf tooth can indicate several systematically informative features and is extremely useful for circumscribing fossil leaf taxa. Moreover, it can help discriminate species or even higher taxa accurately. Previous studies extract features that are not strictly defined in botany; therefore, a uniform standard to compare the accuracies of various feature extraction methods cannot be used. For efficient and automatic retrieval of plant leaves from a leaf database, in this study, we propose an image-based description and measurement of leaf teeth by referring to the leaf structure classification system in botany. First, image preprocessing is carried out to obtain a binary map of plant leaves. Then, corner detection based on the curvature scale-space (CSS) algorithm is used to extract the inflection point from the edges; next, the leaf tooth apex is extracted by screening the convex points; then, according to the definition of the leaf structure, the characteristics of the leaf teeth are described and measured in terms of number of orders of teeth, tooth spacing, number of teeth, sinus shape, and tooth shape. In this manner, data extracted from the algorithm can not only be used to classify plants, but also provide scientific and standardized data to understand the history of plant evolution. Finally, to verify the effectiveness of the extraction method, we used simple linear discriminant analysis and multiclass support vector machine to classify leaves. The results show that the proposed method achieves high accuracy that is superior to that of other methods. Public Library of Science 2019-02-13 /pmc/articles/PMC6373932/ /pubmed/30759085 http://dx.doi.org/10.1371/journal.pone.0204714 Text en © 2019 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wang, Hu Tian, Di Li, Chu Tian, Yan Zhou, Haoyu Plant leaf tooth feature extraction |
title | Plant leaf tooth feature extraction |
title_full | Plant leaf tooth feature extraction |
title_fullStr | Plant leaf tooth feature extraction |
title_full_unstemmed | Plant leaf tooth feature extraction |
title_short | Plant leaf tooth feature extraction |
title_sort | plant leaf tooth feature extraction |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373932/ https://www.ncbi.nlm.nih.gov/pubmed/30759085 http://dx.doi.org/10.1371/journal.pone.0204714 |
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