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Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging

There has been a recent major upsurge in the concerns about reproducibility in many areas of science. Within the neuroimaging domain, one approach is to promote reproducibility is to target the re-executability of the publication. The information supporting such re-executability can enable the detai...

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Autores principales: Kennedy, David N., Abraham, Sanu A., Bates, Julianna F., Crowley, Albert, Ghosh, Satrajit, Gillespie, Tom, Goncalves, Mathias, Grethe, Jeffrey S., Halchenko, Yaroslav O., Hanke, Michael, Haselgrove, Christian, Hodge, Steven M., Jarecka, Dorota, Kaczmarzyk, Jakub, Keator, David B., Meyer, Kyle, Martone, Maryann E., Padhy, Smruti, Poline, Jean-Baptiste, Preuss, Nina, Sincomb, Troy, Travers, Matt
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374302/
https://www.ncbi.nlm.nih.gov/pubmed/30792636
http://dx.doi.org/10.3389/fninf.2019.00001
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author Kennedy, David N.
Abraham, Sanu A.
Bates, Julianna F.
Crowley, Albert
Ghosh, Satrajit
Gillespie, Tom
Goncalves, Mathias
Grethe, Jeffrey S.
Halchenko, Yaroslav O.
Hanke, Michael
Haselgrove, Christian
Hodge, Steven M.
Jarecka, Dorota
Kaczmarzyk, Jakub
Keator, David B.
Meyer, Kyle
Martone, Maryann E.
Padhy, Smruti
Poline, Jean-Baptiste
Preuss, Nina
Sincomb, Troy
Travers, Matt
author_facet Kennedy, David N.
Abraham, Sanu A.
Bates, Julianna F.
Crowley, Albert
Ghosh, Satrajit
Gillespie, Tom
Goncalves, Mathias
Grethe, Jeffrey S.
Halchenko, Yaroslav O.
Hanke, Michael
Haselgrove, Christian
Hodge, Steven M.
Jarecka, Dorota
Kaczmarzyk, Jakub
Keator, David B.
Meyer, Kyle
Martone, Maryann E.
Padhy, Smruti
Poline, Jean-Baptiste
Preuss, Nina
Sincomb, Troy
Travers, Matt
author_sort Kennedy, David N.
collection PubMed
description There has been a recent major upsurge in the concerns about reproducibility in many areas of science. Within the neuroimaging domain, one approach is to promote reproducibility is to target the re-executability of the publication. The information supporting such re-executability can enable the detailed examination of how an initial finding generalizes across changes in the processing approach, and sampled population, in a controlled scientific fashion. ReproNim: A Center for Reproducible Neuroimaging Computation is a recently funded initiative that seeks to facilitate the “last mile” implementations of core re-executability tools in order to reduce the accessibility barrier and increase adoption of standards and best practices at the neuroimaging research laboratory level. In this report, we summarize the overall approach and tools we have developed in this domain.
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spelling pubmed-63743022019-02-21 Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging Kennedy, David N. Abraham, Sanu A. Bates, Julianna F. Crowley, Albert Ghosh, Satrajit Gillespie, Tom Goncalves, Mathias Grethe, Jeffrey S. Halchenko, Yaroslav O. Hanke, Michael Haselgrove, Christian Hodge, Steven M. Jarecka, Dorota Kaczmarzyk, Jakub Keator, David B. Meyer, Kyle Martone, Maryann E. Padhy, Smruti Poline, Jean-Baptiste Preuss, Nina Sincomb, Troy Travers, Matt Front Neuroinform Neuroscience There has been a recent major upsurge in the concerns about reproducibility in many areas of science. Within the neuroimaging domain, one approach is to promote reproducibility is to target the re-executability of the publication. The information supporting such re-executability can enable the detailed examination of how an initial finding generalizes across changes in the processing approach, and sampled population, in a controlled scientific fashion. ReproNim: A Center for Reproducible Neuroimaging Computation is a recently funded initiative that seeks to facilitate the “last mile” implementations of core re-executability tools in order to reduce the accessibility barrier and increase adoption of standards and best practices at the neuroimaging research laboratory level. In this report, we summarize the overall approach and tools we have developed in this domain. Frontiers Media S.A. 2019-02-07 /pmc/articles/PMC6374302/ /pubmed/30792636 http://dx.doi.org/10.3389/fninf.2019.00001 Text en Copyright © 2019 Kennedy, Abraham, Bates, Crowley, Ghosh, Gillespie, Goncalves, Grethe, Halchenko, Hanke, Haselgrove, Hodge, Jarecka, Kaczmarzyk, Keator, Meyer, Martone, Padhy, Poline, Preuss, Sincomb and Travers. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Kennedy, David N.
Abraham, Sanu A.
Bates, Julianna F.
Crowley, Albert
Ghosh, Satrajit
Gillespie, Tom
Goncalves, Mathias
Grethe, Jeffrey S.
Halchenko, Yaroslav O.
Hanke, Michael
Haselgrove, Christian
Hodge, Steven M.
Jarecka, Dorota
Kaczmarzyk, Jakub
Keator, David B.
Meyer, Kyle
Martone, Maryann E.
Padhy, Smruti
Poline, Jean-Baptiste
Preuss, Nina
Sincomb, Troy
Travers, Matt
Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title_full Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title_fullStr Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title_full_unstemmed Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title_short Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
title_sort everything matters: the repronim perspective on reproducible neuroimaging
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374302/
https://www.ncbi.nlm.nih.gov/pubmed/30792636
http://dx.doi.org/10.3389/fninf.2019.00001
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