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Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution
Environmental DNA (eDNA) analysis has successfully detected organisms in various aquatic environments. However, there is little basic information on eDNA, including the eDNA shedding and degradation processes. This study focused on water temperature and fish biomass and showed that eDNA shedding, de...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374661/ https://www.ncbi.nlm.nih.gov/pubmed/30805147 http://dx.doi.org/10.1002/ece3.4802 |
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author | Jo, Toshiaki Murakami, Hiroaki Yamamoto, Satoshi Masuda, Reiji Minamoto, Toshifumi |
author_facet | Jo, Toshiaki Murakami, Hiroaki Yamamoto, Satoshi Masuda, Reiji Minamoto, Toshifumi |
author_sort | Jo, Toshiaki |
collection | PubMed |
description | Environmental DNA (eDNA) analysis has successfully detected organisms in various aquatic environments. However, there is little basic information on eDNA, including the eDNA shedding and degradation processes. This study focused on water temperature and fish biomass and showed that eDNA shedding, degradation, and size distribution varied depending on water temperature and fish biomass. The tank experiments consisted of four temperature levels and three fish biomass levels. The total eDNA and size‐fractioned eDNA from Japanese Jack Mackerels (Trachurus japonicus) were quantified before and after removing the fish. The results showed that the eDNA shedding rate increased at higher water temperature and larger fish biomass, and the eDNA decay rate also increased at higher temperature and fish biomass. In addition, the small‐sized eDNA fractions were proportionally larger at higher temperatures, and these proportions varied among fish biomass. After removing the fish from the tanks, the percentage of eDNA temporally decreased when the eDNA size fraction was >10 µm, while the smaller size fractions increased. These results have the potential to make the use of eDNA analysis more widespread in the future. |
format | Online Article Text |
id | pubmed-6374661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63746612019-02-25 Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution Jo, Toshiaki Murakami, Hiroaki Yamamoto, Satoshi Masuda, Reiji Minamoto, Toshifumi Ecol Evol Original Research Environmental DNA (eDNA) analysis has successfully detected organisms in various aquatic environments. However, there is little basic information on eDNA, including the eDNA shedding and degradation processes. This study focused on water temperature and fish biomass and showed that eDNA shedding, degradation, and size distribution varied depending on water temperature and fish biomass. The tank experiments consisted of four temperature levels and three fish biomass levels. The total eDNA and size‐fractioned eDNA from Japanese Jack Mackerels (Trachurus japonicus) were quantified before and after removing the fish. The results showed that the eDNA shedding rate increased at higher water temperature and larger fish biomass, and the eDNA decay rate also increased at higher temperature and fish biomass. In addition, the small‐sized eDNA fractions were proportionally larger at higher temperatures, and these proportions varied among fish biomass. After removing the fish from the tanks, the percentage of eDNA temporally decreased when the eDNA size fraction was >10 µm, while the smaller size fractions increased. These results have the potential to make the use of eDNA analysis more widespread in the future. John Wiley and Sons Inc. 2019-01-21 /pmc/articles/PMC6374661/ /pubmed/30805147 http://dx.doi.org/10.1002/ece3.4802 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Jo, Toshiaki Murakami, Hiroaki Yamamoto, Satoshi Masuda, Reiji Minamoto, Toshifumi Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title | Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title_full | Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title_fullStr | Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title_full_unstemmed | Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title_short | Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution |
title_sort | effect of water temperature and fish biomass on environmental dna shedding, degradation, and size distribution |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374661/ https://www.ncbi.nlm.nih.gov/pubmed/30805147 http://dx.doi.org/10.1002/ece3.4802 |
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