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Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features
To evaluate the relative contribution of different Magnetic Resonance Imaging (MRI) sequences for the extraction of radiomics features in a cohort of patients with lacrimal gland tumors. This prospective study was approved by the Institutional Review Board and signed informed consent was obtained fr...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376058/ https://www.ncbi.nlm.nih.gov/pubmed/30765732 http://dx.doi.org/10.1038/s41598-018-37984-8 |
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author | Lecler, A. Duron, L. Balvay, D. Savatovsky, J. Bergès, O. Zmuda, M. Farah, E. Galatoire, O. Bouchouicha, A. Fournier, L. S. |
author_facet | Lecler, A. Duron, L. Balvay, D. Savatovsky, J. Bergès, O. Zmuda, M. Farah, E. Galatoire, O. Bouchouicha, A. Fournier, L. S. |
author_sort | Lecler, A. |
collection | PubMed |
description | To evaluate the relative contribution of different Magnetic Resonance Imaging (MRI) sequences for the extraction of radiomics features in a cohort of patients with lacrimal gland tumors. This prospective study was approved by the Institutional Review Board and signed informed consent was obtained from all participants. From December 2015 to April 2017, 37 patients with lacrimal gland lesions underwent MRI before surgery, including axial T1-WI, axial Diffusion-WI, coronal DIXON-T2-WI and coronal post-contrast DIXON-T1-WI. Two readers manually delineated both lacrimal glands to assess inter-observer reproducibility, and one reader performed two successive delineations to assess intra-observer reproducibility. Radiomics features were extracted using an in-house software to calculate 85 features per region-of-interest (510 features/patient). Reproducible features were defined as features presenting both an intra-class correlation coefficient ≥0.8 and a concordance correlation coefficient ≥0.9 across combinations of the three delineations. Among these features, the ones yielding redundant information were identified as clusters using hierarchical clustering based on the Spearman correlation coefficient. All the MR sequences provided reproducible radiomics features (range 14(16%)−37(44%)) and non-redundant clusters (range 5–14). The highest numbers of features and clusters were provided by the water and in-phase DIXON T2-WI and water and in-phase post-contrast DIXON T1-WI (37, 26, 26 and 26 features and 14,12, 9 and 11 clusters, respectively). A total of 145 reproducible features grouped into 51 independent clusters was provided by pooling all the MR sequences. All MRI sequences provided reproducible radiomics features yielding independent information which could potentially serve as biomarkers. |
format | Online Article Text |
id | pubmed-6376058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63760582019-02-19 Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features Lecler, A. Duron, L. Balvay, D. Savatovsky, J. Bergès, O. Zmuda, M. Farah, E. Galatoire, O. Bouchouicha, A. Fournier, L. S. Sci Rep Article To evaluate the relative contribution of different Magnetic Resonance Imaging (MRI) sequences for the extraction of radiomics features in a cohort of patients with lacrimal gland tumors. This prospective study was approved by the Institutional Review Board and signed informed consent was obtained from all participants. From December 2015 to April 2017, 37 patients with lacrimal gland lesions underwent MRI before surgery, including axial T1-WI, axial Diffusion-WI, coronal DIXON-T2-WI and coronal post-contrast DIXON-T1-WI. Two readers manually delineated both lacrimal glands to assess inter-observer reproducibility, and one reader performed two successive delineations to assess intra-observer reproducibility. Radiomics features were extracted using an in-house software to calculate 85 features per region-of-interest (510 features/patient). Reproducible features were defined as features presenting both an intra-class correlation coefficient ≥0.8 and a concordance correlation coefficient ≥0.9 across combinations of the three delineations. Among these features, the ones yielding redundant information were identified as clusters using hierarchical clustering based on the Spearman correlation coefficient. All the MR sequences provided reproducible radiomics features (range 14(16%)−37(44%)) and non-redundant clusters (range 5–14). The highest numbers of features and clusters were provided by the water and in-phase DIXON T2-WI and water and in-phase post-contrast DIXON T1-WI (37, 26, 26 and 26 features and 14,12, 9 and 11 clusters, respectively). A total of 145 reproducible features grouped into 51 independent clusters was provided by pooling all the MR sequences. All MRI sequences provided reproducible radiomics features yielding independent information which could potentially serve as biomarkers. Nature Publishing Group UK 2019-02-14 /pmc/articles/PMC6376058/ /pubmed/30765732 http://dx.doi.org/10.1038/s41598-018-37984-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lecler, A. Duron, L. Balvay, D. Savatovsky, J. Bergès, O. Zmuda, M. Farah, E. Galatoire, O. Bouchouicha, A. Fournier, L. S. Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title | Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title_full | Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title_fullStr | Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title_full_unstemmed | Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title_short | Combining Multiple Magnetic Resonance Imaging Sequences Provides Independent Reproducible Radiomics Features |
title_sort | combining multiple magnetic resonance imaging sequences provides independent reproducible radiomics features |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376058/ https://www.ncbi.nlm.nih.gov/pubmed/30765732 http://dx.doi.org/10.1038/s41598-018-37984-8 |
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