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A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer

The five-year survival rate of epithelial ovarian cancer (EOC) is approximately 35–40% despite maximal treatment efforts, highlighting a need for stratification biomarkers for personalized treatment. Here we extract 657 quantitative mathematical descriptors from the preoperative CT images of 364 EOC...

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Autores principales: Lu, Haonan, Arshad, Mubarik, Thornton, Andrew, Avesani, Giacomo, Cunnea, Paula, Curry, Ed, Kanavati, Fahdi, Liang, Jack, Nixon, Katherine, Williams, Sophie T., Hassan, Mona Ali, Bowtell, David D. L., Gabra, Hani, Fotopoulou, Christina, Rockall, Andrea, Aboagye, Eric O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377605/
https://www.ncbi.nlm.nih.gov/pubmed/30770825
http://dx.doi.org/10.1038/s41467-019-08718-9
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author Lu, Haonan
Arshad, Mubarik
Thornton, Andrew
Avesani, Giacomo
Cunnea, Paula
Curry, Ed
Kanavati, Fahdi
Liang, Jack
Nixon, Katherine
Williams, Sophie T.
Hassan, Mona Ali
Bowtell, David D. L.
Gabra, Hani
Fotopoulou, Christina
Rockall, Andrea
Aboagye, Eric O.
author_facet Lu, Haonan
Arshad, Mubarik
Thornton, Andrew
Avesani, Giacomo
Cunnea, Paula
Curry, Ed
Kanavati, Fahdi
Liang, Jack
Nixon, Katherine
Williams, Sophie T.
Hassan, Mona Ali
Bowtell, David D. L.
Gabra, Hani
Fotopoulou, Christina
Rockall, Andrea
Aboagye, Eric O.
author_sort Lu, Haonan
collection PubMed
description The five-year survival rate of epithelial ovarian cancer (EOC) is approximately 35–40% despite maximal treatment efforts, highlighting a need for stratification biomarkers for personalized treatment. Here we extract 657 quantitative mathematical descriptors from the preoperative CT images of 364 EOC patients at their initial presentation. Using machine learning, we derive a non-invasive summary-statistic of the primary ovarian tumor based on 4 descriptors, which we name “Radiomic Prognostic Vector” (RPV). RPV reliably identifies the 5% of patients with median overall survival less than 2 years, significantly improves established prognostic methods, and is validated in two independent, multi-center cohorts. Furthermore, genetic, transcriptomic and proteomic analysis from two independent datasets elucidate that stromal phenotype and DNA damage response pathways are activated in RPV-stratified tumors. RPV and its associated analysis platform could be exploited to guide personalized therapy of EOC and is potentially transferrable to other cancer types.
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spelling pubmed-63776052019-02-19 A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer Lu, Haonan Arshad, Mubarik Thornton, Andrew Avesani, Giacomo Cunnea, Paula Curry, Ed Kanavati, Fahdi Liang, Jack Nixon, Katherine Williams, Sophie T. Hassan, Mona Ali Bowtell, David D. L. Gabra, Hani Fotopoulou, Christina Rockall, Andrea Aboagye, Eric O. Nat Commun Article The five-year survival rate of epithelial ovarian cancer (EOC) is approximately 35–40% despite maximal treatment efforts, highlighting a need for stratification biomarkers for personalized treatment. Here we extract 657 quantitative mathematical descriptors from the preoperative CT images of 364 EOC patients at their initial presentation. Using machine learning, we derive a non-invasive summary-statistic of the primary ovarian tumor based on 4 descriptors, which we name “Radiomic Prognostic Vector” (RPV). RPV reliably identifies the 5% of patients with median overall survival less than 2 years, significantly improves established prognostic methods, and is validated in two independent, multi-center cohorts. Furthermore, genetic, transcriptomic and proteomic analysis from two independent datasets elucidate that stromal phenotype and DNA damage response pathways are activated in RPV-stratified tumors. RPV and its associated analysis platform could be exploited to guide personalized therapy of EOC and is potentially transferrable to other cancer types. Nature Publishing Group UK 2019-02-15 /pmc/articles/PMC6377605/ /pubmed/30770825 http://dx.doi.org/10.1038/s41467-019-08718-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lu, Haonan
Arshad, Mubarik
Thornton, Andrew
Avesani, Giacomo
Cunnea, Paula
Curry, Ed
Kanavati, Fahdi
Liang, Jack
Nixon, Katherine
Williams, Sophie T.
Hassan, Mona Ali
Bowtell, David D. L.
Gabra, Hani
Fotopoulou, Christina
Rockall, Andrea
Aboagye, Eric O.
A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title_full A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title_fullStr A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title_full_unstemmed A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title_short A mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
title_sort mathematical-descriptor of tumor-mesoscopic-structure from computed-tomography images annotates prognostic- and molecular-phenotypes of epithelial ovarian cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377605/
https://www.ncbi.nlm.nih.gov/pubmed/30770825
http://dx.doi.org/10.1038/s41467-019-08718-9
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