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Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat

Improving traits in wheat has historically been challenging due to its large and polyploid genome, limited genetic diversity and in‐field phenotyping constraints. However, within recent years many of these barriers have been lowered. The availability of a chromosome‐level assembly of the wheat genom...

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Autores principales: Borrill, Philippa, Harrington, Sophie A., Uauy, Cristobal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6378701/
https://www.ncbi.nlm.nih.gov/pubmed/30407665
http://dx.doi.org/10.1111/tpj.14150
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author Borrill, Philippa
Harrington, Sophie A.
Uauy, Cristobal
author_facet Borrill, Philippa
Harrington, Sophie A.
Uauy, Cristobal
author_sort Borrill, Philippa
collection PubMed
description Improving traits in wheat has historically been challenging due to its large and polyploid genome, limited genetic diversity and in‐field phenotyping constraints. However, within recent years many of these barriers have been lowered. The availability of a chromosome‐level assembly of the wheat genome now facilitates a step‐change in wheat genetics and provides a common platform for resources, including variation data, gene expression data and genetic markers. The development of sequenced mutant populations and gene‐editing techniques now enables the rapid assessment of gene function in wheat directly. The ability to alter gene function in a targeted manner will unmask the effects of homoeolog redundancy and allow the hidden potential of this polyploid genome to be discovered. New techniques to identify and exploit the genetic diversity within wheat wild relatives now enable wheat breeders to take advantage of these additional sources of variation to address challenges facing food production. Finally, advances in phenomics have unlocked rapid screening of populations for many traits of interest both in greenhouses and in the field. Looking forwards, integrating diverse data types, including genomic, epigenetic and phenomics data, will take advantage of big data approaches including machine learning to understand trait biology in wheat in unprecedented detail.
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spelling pubmed-63787012019-02-28 Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat Borrill, Philippa Harrington, Sophie A. Uauy, Cristobal Plant J Si Genome to Phenome Improving traits in wheat has historically been challenging due to its large and polyploid genome, limited genetic diversity and in‐field phenotyping constraints. However, within recent years many of these barriers have been lowered. The availability of a chromosome‐level assembly of the wheat genome now facilitates a step‐change in wheat genetics and provides a common platform for resources, including variation data, gene expression data and genetic markers. The development of sequenced mutant populations and gene‐editing techniques now enables the rapid assessment of gene function in wheat directly. The ability to alter gene function in a targeted manner will unmask the effects of homoeolog redundancy and allow the hidden potential of this polyploid genome to be discovered. New techniques to identify and exploit the genetic diversity within wheat wild relatives now enable wheat breeders to take advantage of these additional sources of variation to address challenges facing food production. Finally, advances in phenomics have unlocked rapid screening of populations for many traits of interest both in greenhouses and in the field. Looking forwards, integrating diverse data types, including genomic, epigenetic and phenomics data, will take advantage of big data approaches including machine learning to understand trait biology in wheat in unprecedented detail. John Wiley and Sons Inc. 2018-12-19 2019-01 /pmc/articles/PMC6378701/ /pubmed/30407665 http://dx.doi.org/10.1111/tpj.14150 Text en © 2018 The Authors. The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Si Genome to Phenome
Borrill, Philippa
Harrington, Sophie A.
Uauy, Cristobal
Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title_full Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title_fullStr Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title_full_unstemmed Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title_short Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
title_sort applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
topic Si Genome to Phenome
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6378701/
https://www.ncbi.nlm.nih.gov/pubmed/30407665
http://dx.doi.org/10.1111/tpj.14150
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