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Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses

Respiratory viral infections constitute the majority of samples tested in the clinical virology laboratory during the winter season, and are mainly diagnosed using molecular assays, namely real-time PCR (qPCR). Therefore, a high-quality extraction process is critical for successful, reliable and sen...

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Autores principales: Hindiyeh, Musa, Mor, Orna, Pando, Rakefet, Mannasse, Batya, Kabat, Areej, Assraf-Zarfati, Hadar, Mendelson, Ella, Sofer, Danit, Mandelboim, Michal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380621/
https://www.ncbi.nlm.nih.gov/pubmed/30779757
http://dx.doi.org/10.1371/journal.pone.0211079
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author Hindiyeh, Musa
Mor, Orna
Pando, Rakefet
Mannasse, Batya
Kabat, Areej
Assraf-Zarfati, Hadar
Mendelson, Ella
Sofer, Danit
Mandelboim, Michal
author_facet Hindiyeh, Musa
Mor, Orna
Pando, Rakefet
Mannasse, Batya
Kabat, Areej
Assraf-Zarfati, Hadar
Mendelson, Ella
Sofer, Danit
Mandelboim, Michal
author_sort Hindiyeh, Musa
collection PubMed
description Respiratory viral infections constitute the majority of samples tested in the clinical virology laboratory during the winter season, and are mainly diagnosed using molecular assays, namely real-time PCR (qPCR). Therefore, a high-quality extraction process is critical for successful, reliable and sensitive qPCR results. Here we aimed to evaluate the performance of the newly launched eMAG compared to the fully automated MagNA PURE 96 (Roche, Germany) and to the semi-automated easyMAG (bioMerieux, France) extraction platforms. For this analysis, we assessed and compared the analytic and clinical performance of the three platforms, using 262 archived respiratory samples positive or negative to common viruses regularly examined in our laboratory (influenza A, B, H1N1pdm, Respiratory Syncytial Virus (RSV), human Metapneumovirus (hMPV), parainfluenza-3, adenovirus and negative samples). In addition, quantitated virus controls were used to determine the limit of detection of each extraction method. In all categories tested, eMAG results were comparable to those of the easyMAG and MagNa PURE 96, highly sensitive for all viruses and over 98% clinical specificity and sensitivity for all viruses tested. Together with its high level of automation, the bioMerieux eMAG is a high-quality extraction platform enabling effective molecular analysis and is mostly suitable for medium-sized laboratories.
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spelling pubmed-63806212019-03-01 Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses Hindiyeh, Musa Mor, Orna Pando, Rakefet Mannasse, Batya Kabat, Areej Assraf-Zarfati, Hadar Mendelson, Ella Sofer, Danit Mandelboim, Michal PLoS One Research Article Respiratory viral infections constitute the majority of samples tested in the clinical virology laboratory during the winter season, and are mainly diagnosed using molecular assays, namely real-time PCR (qPCR). Therefore, a high-quality extraction process is critical for successful, reliable and sensitive qPCR results. Here we aimed to evaluate the performance of the newly launched eMAG compared to the fully automated MagNA PURE 96 (Roche, Germany) and to the semi-automated easyMAG (bioMerieux, France) extraction platforms. For this analysis, we assessed and compared the analytic and clinical performance of the three platforms, using 262 archived respiratory samples positive or negative to common viruses regularly examined in our laboratory (influenza A, B, H1N1pdm, Respiratory Syncytial Virus (RSV), human Metapneumovirus (hMPV), parainfluenza-3, adenovirus and negative samples). In addition, quantitated virus controls were used to determine the limit of detection of each extraction method. In all categories tested, eMAG results were comparable to those of the easyMAG and MagNa PURE 96, highly sensitive for all viruses and over 98% clinical specificity and sensitivity for all viruses tested. Together with its high level of automation, the bioMerieux eMAG is a high-quality extraction platform enabling effective molecular analysis and is mostly suitable for medium-sized laboratories. Public Library of Science 2019-02-19 /pmc/articles/PMC6380621/ /pubmed/30779757 http://dx.doi.org/10.1371/journal.pone.0211079 Text en © 2019 Hindiyeh et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hindiyeh, Musa
Mor, Orna
Pando, Rakefet
Mannasse, Batya
Kabat, Areej
Assraf-Zarfati, Hadar
Mendelson, Ella
Sofer, Danit
Mandelboim, Michal
Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title_full Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title_fullStr Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title_full_unstemmed Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title_short Comparison of the new fully automated extraction platform eMAG to the MagNA PURE 96 and the well-established easyMAG for detection of common human respiratory viruses
title_sort comparison of the new fully automated extraction platform emag to the magna pure 96 and the well-established easymag for detection of common human respiratory viruses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380621/
https://www.ncbi.nlm.nih.gov/pubmed/30779757
http://dx.doi.org/10.1371/journal.pone.0211079
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