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A dicentric chromosome identification method based on clustering and watershed algorithm
Aiming at the problem of low efficiency of dicentric chromosome identification counting under the microscope, this paper presents a joint processing algorithm combining clustering and watershed. The method first uses clustering and watershed algorithm to segment the original chromosome image, and th...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6381119/ https://www.ncbi.nlm.nih.gov/pubmed/30783206 http://dx.doi.org/10.1038/s41598-019-38614-7 |
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author | Shen, Xiang Qi, Yafeng Ma, Tengfei Zhou, Zhenggan |
author_facet | Shen, Xiang Qi, Yafeng Ma, Tengfei Zhou, Zhenggan |
author_sort | Shen, Xiang |
collection | PubMed |
description | Aiming at the problem of low efficiency of dicentric chromosome identification counting under the microscope, this paper presents a joint processing algorithm combining clustering and watershed. The method first uses clustering and watershed algorithm to segment the original chromosome image, and then identifies the individual chromosomes. The results show that when the equivalent width Y parameter is selected m = 1, n = 1, the true positive rate of dicentric chromosome identification is 76.6%, and positive predictive value is 76.6% in high dose, which is higher than the threshold algorithm for the true positive rate (63.9%) and positive predictive value (63.5%). The number of identified dicentric chromosomes can be used for dose estimation. When 500 cells are used for identification and dose estimation, the dose estimation pass rate can reach 80% in high dose. But for low dose, more cells should be used to identify to increase the dose estimation pass rate. |
format | Online Article Text |
id | pubmed-6381119 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63811192019-02-22 A dicentric chromosome identification method based on clustering and watershed algorithm Shen, Xiang Qi, Yafeng Ma, Tengfei Zhou, Zhenggan Sci Rep Article Aiming at the problem of low efficiency of dicentric chromosome identification counting under the microscope, this paper presents a joint processing algorithm combining clustering and watershed. The method first uses clustering and watershed algorithm to segment the original chromosome image, and then identifies the individual chromosomes. The results show that when the equivalent width Y parameter is selected m = 1, n = 1, the true positive rate of dicentric chromosome identification is 76.6%, and positive predictive value is 76.6% in high dose, which is higher than the threshold algorithm for the true positive rate (63.9%) and positive predictive value (63.5%). The number of identified dicentric chromosomes can be used for dose estimation. When 500 cells are used for identification and dose estimation, the dose estimation pass rate can reach 80% in high dose. But for low dose, more cells should be used to identify to increase the dose estimation pass rate. Nature Publishing Group UK 2019-02-19 /pmc/articles/PMC6381119/ /pubmed/30783206 http://dx.doi.org/10.1038/s41598-019-38614-7 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Shen, Xiang Qi, Yafeng Ma, Tengfei Zhou, Zhenggan A dicentric chromosome identification method based on clustering and watershed algorithm |
title | A dicentric chromosome identification method based on clustering and watershed algorithm |
title_full | A dicentric chromosome identification method based on clustering and watershed algorithm |
title_fullStr | A dicentric chromosome identification method based on clustering and watershed algorithm |
title_full_unstemmed | A dicentric chromosome identification method based on clustering and watershed algorithm |
title_short | A dicentric chromosome identification method based on clustering and watershed algorithm |
title_sort | dicentric chromosome identification method based on clustering and watershed algorithm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6381119/ https://www.ncbi.nlm.nih.gov/pubmed/30783206 http://dx.doi.org/10.1038/s41598-019-38614-7 |
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