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Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression
BACKGROUND: Gestational diabetes mellitus (GDM) is one of the most common problems during pregnancy. Lack of international consistent diagnostic procedures has limit improvement of current therapeutic effectiveness. Here, we aimed to screen potential gene biomarkers that might play vital roles in GD...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382444/ https://www.ncbi.nlm.nih.gov/pubmed/30474315 http://dx.doi.org/10.1002/mgg3.515 |
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author | Zhao, Xiaomin Li, Wen |
author_facet | Zhao, Xiaomin Li, Wen |
author_sort | Zhao, Xiaomin |
collection | PubMed |
description | BACKGROUND: Gestational diabetes mellitus (GDM) is one of the most common problems during pregnancy. Lack of international consistent diagnostic procedures has limit improvement of current therapeutic effectiveness. Here, we aimed to screen potential gene biomarkers that might play vital roles in GDM progression for assistance of its diagnostic and treatment. METHODS: Gene expression profiles in four GDM placentae at first trimester, four GDM placentae at second trimester, and four normal placentae were obtained from the publicly available Gene Expression Omnibus (GEO). Weighted gene coexpression network analysis (WGCNA) indicated two gene modules, that is, black and brown module, that was significantly positively and negatively correlated with GDM progression time points, respectively. Additionally, a significant positive correlation between module membership (MM) and degree in protein–protein interaction network of brown module genes was observed. RESULTS: KIF2C, CENPE, CCNA2, AURKB, MAD2L1, CCNB2, CDC20, PLK1, CCNB1, and CDK1 all have degree larger than 50 and MM larger than 0.9, so they might be valuable biomarkers in GDM. Gene set enrichment analysis inferred tight relations between carbohydrate metabolism or steroid biosynthesis‐related processes and GDM progression. CONCLUSIONS: All in all, our study should provide several novel references for GDM diagnosis and therapeutic. |
format | Online Article Text |
id | pubmed-6382444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63824442019-03-01 Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression Zhao, Xiaomin Li, Wen Mol Genet Genomic Med Original Articles BACKGROUND: Gestational diabetes mellitus (GDM) is one of the most common problems during pregnancy. Lack of international consistent diagnostic procedures has limit improvement of current therapeutic effectiveness. Here, we aimed to screen potential gene biomarkers that might play vital roles in GDM progression for assistance of its diagnostic and treatment. METHODS: Gene expression profiles in four GDM placentae at first trimester, four GDM placentae at second trimester, and four normal placentae were obtained from the publicly available Gene Expression Omnibus (GEO). Weighted gene coexpression network analysis (WGCNA) indicated two gene modules, that is, black and brown module, that was significantly positively and negatively correlated with GDM progression time points, respectively. Additionally, a significant positive correlation between module membership (MM) and degree in protein–protein interaction network of brown module genes was observed. RESULTS: KIF2C, CENPE, CCNA2, AURKB, MAD2L1, CCNB2, CDC20, PLK1, CCNB1, and CDK1 all have degree larger than 50 and MM larger than 0.9, so they might be valuable biomarkers in GDM. Gene set enrichment analysis inferred tight relations between carbohydrate metabolism or steroid biosynthesis‐related processes and GDM progression. CONCLUSIONS: All in all, our study should provide several novel references for GDM diagnosis and therapeutic. John Wiley and Sons Inc. 2018-11-25 /pmc/articles/PMC6382444/ /pubmed/30474315 http://dx.doi.org/10.1002/mgg3.515 Text en © 2018 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Zhao, Xiaomin Li, Wen Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title | Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title_full | Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title_fullStr | Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title_full_unstemmed | Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title_short | Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
title_sort | gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382444/ https://www.ncbi.nlm.nih.gov/pubmed/30474315 http://dx.doi.org/10.1002/mgg3.515 |
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