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Long-read sequence and assembly of segmental duplications

We developed a computational method based on polyploid phasing of long sequence reads to resolve collapsed regions of segmental duplications within genome assemblies. The approach, Segmental Duplication Assembler (SDA), constructs graphs where paralogous sequence variants define the nodes and long-r...

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Detalles Bibliográficos
Autores principales:	Vollger, Mitchell R., Dishuck, Philip C., Sorensen, Melanie, Welch, AnneMarie E., Dang, Vy, Dougherty, Max L., Graves-Lindsay, Tina A., Wilson, Richard K., Chaisson, Mark J. P., Eichler, Evan E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382464/ https://www.ncbi.nlm.nih.gov/pubmed/30559433 http://dx.doi.org/10.1038/s41592-018-0236-3

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