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eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis

Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation me...

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Detalles Bibliográficos
Autores principales: Han, Hongqing, Wu, Guoyu, Li, Yuchao, Zi, Zhike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383125/
https://www.ncbi.nlm.nih.gov/pubmed/30785030
http://dx.doi.org/10.1016/j.isci.2019.02.004
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author Han, Hongqing
Wu, Guoyu
Li, Yuchao
Zi, Zhike
author_facet Han, Hongqing
Wu, Guoyu
Li, Yuchao
Zi, Zhike
author_sort Han, Hongqing
collection PubMed
description Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation method that can analyze massive imaging datasets with high accuracy. Here, we present eDetect, a fast error detection and correction tool that provides a powerful and convenient solution for the curation of live cell imaging analysis results. In eDetect, we propose a gating strategy to distinguish correct and incorrect image analysis results by visualizing image features based on principal component analysis. We demonstrate that this approach can substantially accelerate the data correction process and improve the accuracy of imaging data analysis. eDetect is well documented and designed to be user friendly for non-expert users. It is freely available at https://sites.google.com/view/edetect/ and https://github.com/Zi-Lab/eDetect.
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spelling pubmed-63831252019-03-01 eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis Han, Hongqing Wu, Guoyu Li, Yuchao Zi, Zhike iScience Article Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation method that can analyze massive imaging datasets with high accuracy. Here, we present eDetect, a fast error detection and correction tool that provides a powerful and convenient solution for the curation of live cell imaging analysis results. In eDetect, we propose a gating strategy to distinguish correct and incorrect image analysis results by visualizing image features based on principal component analysis. We demonstrate that this approach can substantially accelerate the data correction process and improve the accuracy of imaging data analysis. eDetect is well documented and designed to be user friendly for non-expert users. It is freely available at https://sites.google.com/view/edetect/ and https://github.com/Zi-Lab/eDetect. Elsevier 2019-02-08 /pmc/articles/PMC6383125/ /pubmed/30785030 http://dx.doi.org/10.1016/j.isci.2019.02.004 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Han, Hongqing
Wu, Guoyu
Li, Yuchao
Zi, Zhike
eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title_full eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title_fullStr eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title_full_unstemmed eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title_short eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
title_sort edetect: a fast error detection and correction tool for live cell imaging data analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383125/
https://www.ncbi.nlm.nih.gov/pubmed/30785030
http://dx.doi.org/10.1016/j.isci.2019.02.004
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