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eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis
Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation me...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383125/ https://www.ncbi.nlm.nih.gov/pubmed/30785030 http://dx.doi.org/10.1016/j.isci.2019.02.004 |
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author | Han, Hongqing Wu, Guoyu Li, Yuchao Zi, Zhike |
author_facet | Han, Hongqing Wu, Guoyu Li, Yuchao Zi, Zhike |
author_sort | Han, Hongqing |
collection | PubMed |
description | Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation method that can analyze massive imaging datasets with high accuracy. Here, we present eDetect, a fast error detection and correction tool that provides a powerful and convenient solution for the curation of live cell imaging analysis results. In eDetect, we propose a gating strategy to distinguish correct and incorrect image analysis results by visualizing image features based on principal component analysis. We demonstrate that this approach can substantially accelerate the data correction process and improve the accuracy of imaging data analysis. eDetect is well documented and designed to be user friendly for non-expert users. It is freely available at https://sites.google.com/view/edetect/ and https://github.com/Zi-Lab/eDetect. |
format | Online Article Text |
id | pubmed-6383125 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-63831252019-03-01 eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis Han, Hongqing Wu, Guoyu Li, Yuchao Zi, Zhike iScience Article Live cell imaging has been widely used to generate data for quantitative understanding of cellular dynamics. Various applications have been developed to perform automated imaging data analysis, which often requires tedious manual correction. It remains a challenge to develop an efficient curation method that can analyze massive imaging datasets with high accuracy. Here, we present eDetect, a fast error detection and correction tool that provides a powerful and convenient solution for the curation of live cell imaging analysis results. In eDetect, we propose a gating strategy to distinguish correct and incorrect image analysis results by visualizing image features based on principal component analysis. We demonstrate that this approach can substantially accelerate the data correction process and improve the accuracy of imaging data analysis. eDetect is well documented and designed to be user friendly for non-expert users. It is freely available at https://sites.google.com/view/edetect/ and https://github.com/Zi-Lab/eDetect. Elsevier 2019-02-08 /pmc/articles/PMC6383125/ /pubmed/30785030 http://dx.doi.org/10.1016/j.isci.2019.02.004 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Han, Hongqing Wu, Guoyu Li, Yuchao Zi, Zhike eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title | eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title_full | eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title_fullStr | eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title_full_unstemmed | eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title_short | eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis |
title_sort | edetect: a fast error detection and correction tool for live cell imaging data analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383125/ https://www.ncbi.nlm.nih.gov/pubmed/30785030 http://dx.doi.org/10.1016/j.isci.2019.02.004 |
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