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Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models
A Partial Least Squares (PLS) carbonate (CO(3)) prediction model was developed for soils throughout the contiguous United States using mid-infrared (MIR) spectroscopy. Excellent performance was achieved over an extensive geographic and chemical diversity of soils. A single model for all soil types p...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383893/ https://www.ncbi.nlm.nih.gov/pubmed/30789918 http://dx.doi.org/10.1371/journal.pone.0210235 |
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author | Comstock, Jonathan P. Sherpa, Sonam R. Ferguson, Richard Bailey, Scarlett Beem-Miller, Jeffrey P. Lin, Feng Lehmann, Johannes Wolfe, David W. |
author_facet | Comstock, Jonathan P. Sherpa, Sonam R. Ferguson, Richard Bailey, Scarlett Beem-Miller, Jeffrey P. Lin, Feng Lehmann, Johannes Wolfe, David W. |
author_sort | Comstock, Jonathan P. |
collection | PubMed |
description | A Partial Least Squares (PLS) carbonate (CO(3)) prediction model was developed for soils throughout the contiguous United States using mid-infrared (MIR) spectroscopy. Excellent performance was achieved over an extensive geographic and chemical diversity of soils. A single model for all soil types performed very well with a root mean square error of prediction (RMSEP) of 12.6 g kg(-1) and was further improved if Histosols were excluded (RMSEP 11.1 g kg(-1)). Exclusion of Histosols was particularly beneficial for accurate prediction of CO(3) values when the national model was applied to an independent regional dataset. Little advantage was found in further narrowing the taxonomic breadth of the calibration dataset, but higher precision was obtained by running models for a restricted range of CO(3). A model calibrated using only on the independent regional dataset, was unable to accurately predict CO(3) content for the more chemically diverse national dataset. Ten absorbance peaks enabling CO(3) prediction by mid-infrared (MIR) spectroscopy were identified and evaluated for individual and combined predictive power. A single-band model derived from an absorbance peak centered at 1796 cm(-)yielded the lowest RMSEP of 13.5 g kg(-1) for carbonate prediction compared to other single-band models. This predictive power is attributed to the strength and sharpness of the peak, and an apparent minimal overlap with confounding co-occurring spectral features of other soil components. Drawing from the 10 identified bands, multiple combinations of 3 or 4 peaks were able to predict CO(3) content as well as the full-spectrum national models. Soil CO(3) is an excellent example of a soil parameter that can be predicted with great effectiveness and generality, and MIR models could replace direct laboratory measurement as a lower cost, high quality alternative. |
format | Online Article Text |
id | pubmed-6383893 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-63838932019-03-09 Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models Comstock, Jonathan P. Sherpa, Sonam R. Ferguson, Richard Bailey, Scarlett Beem-Miller, Jeffrey P. Lin, Feng Lehmann, Johannes Wolfe, David W. PLoS One Research Article A Partial Least Squares (PLS) carbonate (CO(3)) prediction model was developed for soils throughout the contiguous United States using mid-infrared (MIR) spectroscopy. Excellent performance was achieved over an extensive geographic and chemical diversity of soils. A single model for all soil types performed very well with a root mean square error of prediction (RMSEP) of 12.6 g kg(-1) and was further improved if Histosols were excluded (RMSEP 11.1 g kg(-1)). Exclusion of Histosols was particularly beneficial for accurate prediction of CO(3) values when the national model was applied to an independent regional dataset. Little advantage was found in further narrowing the taxonomic breadth of the calibration dataset, but higher precision was obtained by running models for a restricted range of CO(3). A model calibrated using only on the independent regional dataset, was unable to accurately predict CO(3) content for the more chemically diverse national dataset. Ten absorbance peaks enabling CO(3) prediction by mid-infrared (MIR) spectroscopy were identified and evaluated for individual and combined predictive power. A single-band model derived from an absorbance peak centered at 1796 cm(-)yielded the lowest RMSEP of 13.5 g kg(-1) for carbonate prediction compared to other single-band models. This predictive power is attributed to the strength and sharpness of the peak, and an apparent minimal overlap with confounding co-occurring spectral features of other soil components. Drawing from the 10 identified bands, multiple combinations of 3 or 4 peaks were able to predict CO(3) content as well as the full-spectrum national models. Soil CO(3) is an excellent example of a soil parameter that can be predicted with great effectiveness and generality, and MIR models could replace direct laboratory measurement as a lower cost, high quality alternative. Public Library of Science 2019-02-21 /pmc/articles/PMC6383893/ /pubmed/30789918 http://dx.doi.org/10.1371/journal.pone.0210235 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Comstock, Jonathan P. Sherpa, Sonam R. Ferguson, Richard Bailey, Scarlett Beem-Miller, Jeffrey P. Lin, Feng Lehmann, Johannes Wolfe, David W. Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title | Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title_full | Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title_fullStr | Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title_full_unstemmed | Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title_short | Carbonate determination in soils by mid-IR spectroscopy with regional and continental scale models |
title_sort | carbonate determination in soils by mid-ir spectroscopy with regional and continental scale models |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383893/ https://www.ncbi.nlm.nih.gov/pubmed/30789918 http://dx.doi.org/10.1371/journal.pone.0210235 |
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