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BioJava 5: A community driven open-source bioinformatics library

BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 201...

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Detalles Bibliográficos
Autores principales: Lafita, Aleix, Bliven, Spencer, Prlić, Andreas, Guzenko, Dmytro, Rose, Peter W., Bradley, Anthony, Pavan, Paolo, Myers-Turnbull, Douglas, Valasatava, Yana, Heuer, Michael, Larson, Matt, Burley, Stephen K., Duarte, Jose M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383946/
https://www.ncbi.nlm.nih.gov/pubmed/30735498
http://dx.doi.org/10.1371/journal.pcbi.1006791
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author Lafita, Aleix
Bliven, Spencer
Prlić, Andreas
Guzenko, Dmytro
Rose, Peter W.
Bradley, Anthony
Pavan, Paolo
Myers-Turnbull, Douglas
Valasatava, Yana
Heuer, Michael
Larson, Matt
Burley, Stephen K.
Duarte, Jose M.
author_facet Lafita, Aleix
Bliven, Spencer
Prlić, Andreas
Guzenko, Dmytro
Rose, Peter W.
Bradley, Anthony
Pavan, Paolo
Myers-Turnbull, Douglas
Valasatava, Yana
Heuer, Michael
Larson, Matt
Burley, Stephen K.
Duarte, Jose M.
author_sort Lafita, Aleix
collection PubMed
description BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 2012, we have released two major versions of the library (4 and 5) that include many new features to tackle challenges with increasingly complex macromolecular structure data. BioJava requires Java 8 or higher and is freely available under the LGPL 2.1 license. The project is hosted on GitHub at https://github.com/biojava/biojava. More information and documentation can be found online on the BioJava website (http://www.biojava.org) and tutorial (https://github.com/biojava/biojava-tutorial). All inquiries should be directed to the GitHub page or the BioJava mailing list (http://lists.open-bio.org/mailman/listinfo/biojava-l).
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spelling pubmed-63839462019-03-08 BioJava 5: A community driven open-source bioinformatics library Lafita, Aleix Bliven, Spencer Prlić, Andreas Guzenko, Dmytro Rose, Peter W. Bradley, Anthony Pavan, Paolo Myers-Turnbull, Douglas Valasatava, Yana Heuer, Michael Larson, Matt Burley, Stephen K. Duarte, Jose M. PLoS Comput Biol Research Article BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 2012, we have released two major versions of the library (4 and 5) that include many new features to tackle challenges with increasingly complex macromolecular structure data. BioJava requires Java 8 or higher and is freely available under the LGPL 2.1 license. The project is hosted on GitHub at https://github.com/biojava/biojava. More information and documentation can be found online on the BioJava website (http://www.biojava.org) and tutorial (https://github.com/biojava/biojava-tutorial). All inquiries should be directed to the GitHub page or the BioJava mailing list (http://lists.open-bio.org/mailman/listinfo/biojava-l). Public Library of Science 2019-02-08 /pmc/articles/PMC6383946/ /pubmed/30735498 http://dx.doi.org/10.1371/journal.pcbi.1006791 Text en © 2019 Lafita et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lafita, Aleix
Bliven, Spencer
Prlić, Andreas
Guzenko, Dmytro
Rose, Peter W.
Bradley, Anthony
Pavan, Paolo
Myers-Turnbull, Douglas
Valasatava, Yana
Heuer, Michael
Larson, Matt
Burley, Stephen K.
Duarte, Jose M.
BioJava 5: A community driven open-source bioinformatics library
title BioJava 5: A community driven open-source bioinformatics library
title_full BioJava 5: A community driven open-source bioinformatics library
title_fullStr BioJava 5: A community driven open-source bioinformatics library
title_full_unstemmed BioJava 5: A community driven open-source bioinformatics library
title_short BioJava 5: A community driven open-source bioinformatics library
title_sort biojava 5: a community driven open-source bioinformatics library
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383946/
https://www.ncbi.nlm.nih.gov/pubmed/30735498
http://dx.doi.org/10.1371/journal.pcbi.1006791
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