Cargando…

BioJava 5: A community driven open-source bioinformatics library

BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 201...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lafita, Aleix, Bliven, Spencer, Prlić, Andreas, Guzenko, Dmytro, Rose, Peter W., Bradley, Anthony, Pavan, Paolo, Myers-Turnbull, Douglas, Valasatava, Yana, Heuer, Michael, Larson, Matt, Burley, Stephen K., Duarte, Jose M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2019
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383946/ https://www.ncbi.nlm.nih.gov/pubmed/30735498 http://dx.doi.org/10.1371/journal.pcbi.1006791

Ejemplares similares

BioJava: an open-source framework for bioinformatics in 2012
por: Prlić, Andreas, et al.
Publicado: (2012)

BioJava: an open-source framework for bioinformatics
por: Holland, R. C. G., et al.
Publicado: (2008)

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank
por: Gao, Jianjiong, et al.
Publicado: (2017)

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
por: Bliven, Spencer E., et al.
Publicado: (2019)

Automated evaluation of quaternary structures from protein crystals
por: Bliven, Spencer, et al.
Publicado: (2018)

BioCommons: a robust java library for RNA structural bioinformatics
por: Zok, Tomasz
Publicado: (2021)

Circular Permutation in Proteins
por: Bliven, Spencer, et al.
Publicado: (2012)

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics
por: Rosato, Antonio, et al.
Publicado: (2016)

Real time structural search of the Protein Data Bank
por: Guzenko, Dmytro, et al.
Publicado: (2020)

The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo-and Bioinformatics
por: Steinbeck, Christoph, et al.
Publicado: (2003)

Java programmer's library /
por: Lalani, Suleiman
Publicado: (1996)

Towards an efficient compression of 3D coordinates of macromolecular structures
por: Valasatava, Yana, et al.
Publicado: (2017)

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures
por: Bradley, Anthony R., et al.
Publicado: (2017)

Biological and functional relevance of CASP predictions
por: Liu, Tianyun, et al.
Publicado: (2017)

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components
por: López-Fernández, Hugo, et al.
Publicado: (2018)

The Java class libraries: an annotated reference
por: Chan, Patrick, et al.
Publicado: (1997)

JDATAVIEWER – JAVA-Based Charting Library
por: Kruk, G, et al.
Publicado: (2009)

Java graphics programming library : concepts to source code /
por: Campesato, Oswald
Publicado: (2002)

A numerical library in Java for scientists and engineers
por: Lau, Hang T
Publicado: (2003)

A numerical library in Java for scientists and engineers /
por: Lau, H. T. (Hang Tong), 1952-
Publicado: (2004)

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites
por: Valasatava, Yana, et al.
Publicado: (2015)

Beginning Java 8 APIs, extensions and libraries: Swing, JavaFX, JavaScript, JDBC and network programming APIs
por: Sharan, Kishori
Publicado: (2014)

Discovery of fibrillar adhesins across bacterial species
por: Monzon, Vivian, et al.
Publicado: (2021)

Java APIs, extensions and libraries: with JavaFX, JDBC, jmod, jlink, networking, and the process API
por: Sharan, Kishori
Publicado: (2018)

JSBML: a flexible Java library for working with SBML
por: Dräger, Andreas, et al.
Publicado: (2011)

Pre-calculated protein structure alignments at the RCSB PDB website
por: Prlić, Andreas, et al.
Publicado: (2010)

Mastering Java 11: develop modular and secure Java applications using concurrency and advanced JDK libraries
por: Lavieri, Edward D
Publicado: (2018)

Modern JavaScript: a curated collection of chapters from the O'Reilly JavaScript Library
por: O'Reilly Media
Publicado: (2015)

The mzqLibrary – An open source Java library supporting the HUPO‐PSI quantitative proteomics standard
por: Qi, Da, et al.
Publicado: (2015)

Tensorics - A Java library for manipulating multi-dimensional data
por: Fuchsberger, Kajetan, et al.
Publicado: (2018)

compomics-utilities: an open-source Java library for computational proteomics
por: Barsnes, Harald, et al.
Publicado: (2011)

JAMI: a Java library for molecular interactions and data interoperability
por: Sivade (Dumousseau), M., et al.
Publicado: (2018)

TADOSS: computational estimation of tandem domain swap stability
por: Lafita, Aleix, et al.
Publicado: (2019)

Tandem domain swapping: determinants of multidomain protein misfolding
por: Lafita, Aleix, et al.
Publicado: (2019)

Moara: a Java library for extracting and normalizing gene and protein mentions
por: Neves, Mariana L, et al.
Publicado: (2010)

Dojo: using the Dojo JavaScript library to build Ajax applications
por: Harmon, James E
Publicado: (2009)

LibKiSAO: a Java library for Querying KiSAO
por: Zhukova, Anna, et al.
Publicado: (2012)

Natural language processing with Java cookbook: over 70 recipes to create linguistic and language translation applications using Java libraries
por: Reese, Richard M
Publicado: (2019)

JBioWH: an open-source Java framework for bioinformatics data integration
por: Vera, Roberto, et al.
Publicado: (2013)

To what extent do structural changes in catalytic metal sites affect enzyme function?
por: Valasatava, Yana, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_5ft4q4jgduk0ve1ind9efcpnms