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On the predictability of infectious disease outbreaks

Infectious disease outbreaks recapitulate biology: they emerge from the multi-level interaction of hosts, pathogens, and environment. Therefore, outbreak forecasting requires an integrative approach to modeling. While specific components of outbreaks are predictable, it remains unclear whether funda...

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Detalles Bibliográficos
Autores principales: Scarpino, Samuel V., Petri, Giovanni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385200/
https://www.ncbi.nlm.nih.gov/pubmed/30796206
http://dx.doi.org/10.1038/s41467-019-08616-0
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author Scarpino, Samuel V.
Petri, Giovanni
author_facet Scarpino, Samuel V.
Petri, Giovanni
author_sort Scarpino, Samuel V.
collection PubMed
description Infectious disease outbreaks recapitulate biology: they emerge from the multi-level interaction of hosts, pathogens, and environment. Therefore, outbreak forecasting requires an integrative approach to modeling. While specific components of outbreaks are predictable, it remains unclear whether fundamental limits to outbreak prediction exist. Here, adopting permutation entropy as a model independent measure of predictability, we study the predictability of a diverse collection of outbreaks and identify a fundamental entropy barrier for disease time series forecasting. However, this barrier is often beyond the time scale of single outbreaks, implying prediction is likely to succeed. We show that forecast horizons vary by disease and that both shifting model structures and social network heterogeneity are likely mechanisms for differences in predictability. Our results highlight the importance of embracing dynamic modeling approaches, suggest challenges for performing model selection across long time series, and may relate more broadly to the predictability of complex adaptive systems.
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spelling pubmed-63852002019-02-25 On the predictability of infectious disease outbreaks Scarpino, Samuel V. Petri, Giovanni Nat Commun Article Infectious disease outbreaks recapitulate biology: they emerge from the multi-level interaction of hosts, pathogens, and environment. Therefore, outbreak forecasting requires an integrative approach to modeling. While specific components of outbreaks are predictable, it remains unclear whether fundamental limits to outbreak prediction exist. Here, adopting permutation entropy as a model independent measure of predictability, we study the predictability of a diverse collection of outbreaks and identify a fundamental entropy barrier for disease time series forecasting. However, this barrier is often beyond the time scale of single outbreaks, implying prediction is likely to succeed. We show that forecast horizons vary by disease and that both shifting model structures and social network heterogeneity are likely mechanisms for differences in predictability. Our results highlight the importance of embracing dynamic modeling approaches, suggest challenges for performing model selection across long time series, and may relate more broadly to the predictability of complex adaptive systems. Nature Publishing Group UK 2019-02-22 /pmc/articles/PMC6385200/ /pubmed/30796206 http://dx.doi.org/10.1038/s41467-019-08616-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Scarpino, Samuel V.
Petri, Giovanni
On the predictability of infectious disease outbreaks
title On the predictability of infectious disease outbreaks
title_full On the predictability of infectious disease outbreaks
title_fullStr On the predictability of infectious disease outbreaks
title_full_unstemmed On the predictability of infectious disease outbreaks
title_short On the predictability of infectious disease outbreaks
title_sort on the predictability of infectious disease outbreaks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385200/
https://www.ncbi.nlm.nih.gov/pubmed/30796206
http://dx.doi.org/10.1038/s41467-019-08616-0
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