Cargando…

Polyacrylamide injection matrix for serial femtosecond crystallography

Serial femtosecond crystallography (SFX) provides opportunities to observe the dynamics of macromolecules without causing radiation damage at room temperature. Although SFX provides a biologically more reliable crystal structure than provided by the existing synchrotron sources, there are limitation...

Descripción completa

Detalles Bibliográficos
Autores principales: Park, Jaehyun, Park, Sehan, Kim, Jangwoo, Park, Gisu, Cho, Yunje, Nam, Ki Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385504/
https://www.ncbi.nlm.nih.gov/pubmed/30792457
http://dx.doi.org/10.1038/s41598-019-39020-9
_version_ 1783397219284549632
author Park, Jaehyun
Park, Sehan
Kim, Jangwoo
Park, Gisu
Cho, Yunje
Nam, Ki Hyun
author_facet Park, Jaehyun
Park, Sehan
Kim, Jangwoo
Park, Gisu
Cho, Yunje
Nam, Ki Hyun
author_sort Park, Jaehyun
collection PubMed
description Serial femtosecond crystallography (SFX) provides opportunities to observe the dynamics of macromolecules without causing radiation damage at room temperature. Although SFX provides a biologically more reliable crystal structure than provided by the existing synchrotron sources, there are limitations due to the consumption of many crystal samples. A viscous medium as a carrier matrix reduces the flow rate of the crystal sample from the injector, thereby dramatically reducing sample consumption. However, the currently available media cannot be applied to specific crystal samples owing to reactions between the viscous medium and crystal sample. The discovery and characterisation of a new delivery medium for SFX can further expand its use. Herein, we report the preparation of a polyacrylamide (PAM) injection matrix to determine the crystal structure with an X-ray free-electron laser. We obtained 11,936 and 22,213 indexed images using 0.5 mg lysozyme and 1.0 mg thermolysin, respectively. We determined the crystal structures of lysozyme and thermolysin delivered in PAM at 1.7 Å and 1.8 Å resolutions. The maximum background scattering from PAM was lower than monoolein, a commonly used viscous medium. Our results show that PAM can be used as a sample delivery media in SFX studies.
format Online
Article
Text
id pubmed-6385504
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-63855042019-02-27 Polyacrylamide injection matrix for serial femtosecond crystallography Park, Jaehyun Park, Sehan Kim, Jangwoo Park, Gisu Cho, Yunje Nam, Ki Hyun Sci Rep Article Serial femtosecond crystallography (SFX) provides opportunities to observe the dynamics of macromolecules without causing radiation damage at room temperature. Although SFX provides a biologically more reliable crystal structure than provided by the existing synchrotron sources, there are limitations due to the consumption of many crystal samples. A viscous medium as a carrier matrix reduces the flow rate of the crystal sample from the injector, thereby dramatically reducing sample consumption. However, the currently available media cannot be applied to specific crystal samples owing to reactions between the viscous medium and crystal sample. The discovery and characterisation of a new delivery medium for SFX can further expand its use. Herein, we report the preparation of a polyacrylamide (PAM) injection matrix to determine the crystal structure with an X-ray free-electron laser. We obtained 11,936 and 22,213 indexed images using 0.5 mg lysozyme and 1.0 mg thermolysin, respectively. We determined the crystal structures of lysozyme and thermolysin delivered in PAM at 1.7 Å and 1.8 Å resolutions. The maximum background scattering from PAM was lower than monoolein, a commonly used viscous medium. Our results show that PAM can be used as a sample delivery media in SFX studies. Nature Publishing Group UK 2019-02-21 /pmc/articles/PMC6385504/ /pubmed/30792457 http://dx.doi.org/10.1038/s41598-019-39020-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Park, Jaehyun
Park, Sehan
Kim, Jangwoo
Park, Gisu
Cho, Yunje
Nam, Ki Hyun
Polyacrylamide injection matrix for serial femtosecond crystallography
title Polyacrylamide injection matrix for serial femtosecond crystallography
title_full Polyacrylamide injection matrix for serial femtosecond crystallography
title_fullStr Polyacrylamide injection matrix for serial femtosecond crystallography
title_full_unstemmed Polyacrylamide injection matrix for serial femtosecond crystallography
title_short Polyacrylamide injection matrix for serial femtosecond crystallography
title_sort polyacrylamide injection matrix for serial femtosecond crystallography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385504/
https://www.ncbi.nlm.nih.gov/pubmed/30792457
http://dx.doi.org/10.1038/s41598-019-39020-9
work_keys_str_mv AT parkjaehyun polyacrylamideinjectionmatrixforserialfemtosecondcrystallography
AT parksehan polyacrylamideinjectionmatrixforserialfemtosecondcrystallography
AT kimjangwoo polyacrylamideinjectionmatrixforserialfemtosecondcrystallography
AT parkgisu polyacrylamideinjectionmatrixforserialfemtosecondcrystallography
AT choyunje polyacrylamideinjectionmatrixforserialfemtosecondcrystallography
AT namkihyun polyacrylamideinjectionmatrixforserialfemtosecondcrystallography