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IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification

Automated quantitative image analysis is essential for all fields of life science research. Although several software programs and algorithms have been developed for bioimage processing, an advanced knowledge of image processing techniques and high-performance computing resources are required to use...

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Autores principales: Shimahara, Yuki, Sugawara, Ko, Kojo, Kei H., Kawai, Hiroki, Yoshida, Yuya, Hasezawa, Seiichiro, Kutsuna, Natsumaro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6386377/
https://www.ncbi.nlm.nih.gov/pubmed/30794647
http://dx.doi.org/10.1371/journal.pone.0212619
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author Shimahara, Yuki
Sugawara, Ko
Kojo, Kei H.
Kawai, Hiroki
Yoshida, Yuya
Hasezawa, Seiichiro
Kutsuna, Natsumaro
author_facet Shimahara, Yuki
Sugawara, Ko
Kojo, Kei H.
Kawai, Hiroki
Yoshida, Yuya
Hasezawa, Seiichiro
Kutsuna, Natsumaro
author_sort Shimahara, Yuki
collection PubMed
description Automated quantitative image analysis is essential for all fields of life science research. Although several software programs and algorithms have been developed for bioimage processing, an advanced knowledge of image processing techniques and high-performance computing resources are required to use them. Hence, we developed a cloud-based image analysis platform called IMACEL, which comprises morphological analysis and machine learning-based image classification. The unique click-based user interface of IMACEL’s morphological analysis platform enables researchers with limited resources to evaluate particles rapidly and quantitatively without prior knowledge of image processing. Because all the image processing and machine learning algorithms are performed on high-performance virtual machines, users can access the same analytical environment from anywhere. A validation study of the morphological analysis and image classification of IMACEL was performed. The results indicate that this platform is an accessible and potentially powerful tool for the quantitative evaluation of bioimages that will lower the barriers to life science research.
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spelling pubmed-63863772019-03-09 IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification Shimahara, Yuki Sugawara, Ko Kojo, Kei H. Kawai, Hiroki Yoshida, Yuya Hasezawa, Seiichiro Kutsuna, Natsumaro PLoS One Research Article Automated quantitative image analysis is essential for all fields of life science research. Although several software programs and algorithms have been developed for bioimage processing, an advanced knowledge of image processing techniques and high-performance computing resources are required to use them. Hence, we developed a cloud-based image analysis platform called IMACEL, which comprises morphological analysis and machine learning-based image classification. The unique click-based user interface of IMACEL’s morphological analysis platform enables researchers with limited resources to evaluate particles rapidly and quantitatively without prior knowledge of image processing. Because all the image processing and machine learning algorithms are performed on high-performance virtual machines, users can access the same analytical environment from anywhere. A validation study of the morphological analysis and image classification of IMACEL was performed. The results indicate that this platform is an accessible and potentially powerful tool for the quantitative evaluation of bioimages that will lower the barriers to life science research. Public Library of Science 2019-02-22 /pmc/articles/PMC6386377/ /pubmed/30794647 http://dx.doi.org/10.1371/journal.pone.0212619 Text en © 2019 Shimahara et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shimahara, Yuki
Sugawara, Ko
Kojo, Kei H.
Kawai, Hiroki
Yoshida, Yuya
Hasezawa, Seiichiro
Kutsuna, Natsumaro
IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title_full IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title_fullStr IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title_full_unstemmed IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title_short IMACEL: A cloud-based bioimage analysis platform for morphological analysis and image classification
title_sort imacel: a cloud-based bioimage analysis platform for morphological analysis and image classification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6386377/
https://www.ncbi.nlm.nih.gov/pubmed/30794647
http://dx.doi.org/10.1371/journal.pone.0212619
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