Cargando…

Discovering and deciphering relationships across disparate data modalities

Understanding the relationships between different properties of data, such as whether a genome or connectome has information about disease status, is increasingly important. While existing approaches can test whether two properties are related, they may require unfeasibly large sample sizes and ofte...

Descripción completa

Detalles Bibliográficos
Autores principales: Vogelstein, Joshua T, Bridgeford, Eric W, Wang, Qing, Priebe, Carey E, Maggioni, Mauro, Shen, Cencheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6386524/
https://www.ncbi.nlm.nih.gov/pubmed/30644820
http://dx.doi.org/10.7554/eLife.41690
Descripción
Sumario:Understanding the relationships between different properties of data, such as whether a genome or connectome has information about disease status, is increasingly important. While existing approaches can test whether two properties are related, they may require unfeasibly large sample sizes and often are not interpretable. Our approach, ‘Multiscale Graph Correlation’ (MGC), is a dependence test that juxtaposes disparate data science techniques, including k-nearest neighbors, kernel methods, and multiscale analysis. Other methods may require double or triple the number of samples to achieve the same statistical power as MGC in a benchmark suite including high-dimensional and nonlinear relationships, with dimensionality ranging from 1 to 1000. Moreover, MGC uniquely characterizes the latent geometry underlying the relationship, while maintaining computational efficiency. In real data, including brain imaging and cancer genetics, MGC detects the presence of a dependency and provides guidance for the next experiments to conduct.