Cargando…

Patterns of microsatellite distribution across eukaryotic genomes

BACKGROUND: Microsatellites, or Simple Sequence Repeats (SSRs), are short tandem repeats of 1–6 nt motifs present in all genomes. Emerging evidence points to their role in cellular processes and gene regulation. Despite the huge resource of genomic information currently available, SSRs have been stu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Srivastava, Surabhi, Avvaru, Akshay Kumar, Sowpati, Divya Tej, Mishra, Rakesh K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6387519/ https://www.ncbi.nlm.nih.gov/pubmed/30795733 http://dx.doi.org/10.1186/s12864-019-5516-5

Ejemplares similares

MSDB: a comprehensive, annotated database of microsatellites
por: Avvaru, Akshay Kumar, et al.
Publicado: (2020)

Structural and developmental dynamics of Matrix associated regions in Drosophila melanogaster genome
por: Sureka, Rahul, et al.
Publicado: (2022)

MSDB: A Comprehensive Database of Simple Sequence Repeats
por: Avvaru, Akshay Kumar, et al.
Publicado: (2017)

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
por: Sowpati, Divya Tej, et al.
Publicado: (2017)

SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants
por: Srivastava, Surabhi, et al.
Publicado: (2021)

Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes
por: Saha, Parna, et al.
Publicado: (2020)

Transcriptomic dataset of zebrafish tissues following chronic alcohol exposure and withdrawal
por: Banu, Sofia, et al.
Publicado: (2020)

A ChIP-on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes
por: Srivastava, Surabhi, et al.
Publicado: (2014)

Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights
por: Kumar, Amitha Sampath, et al.
Publicado: (2016)

Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid
por: Khan, Shagufta, et al.
Publicado: (2020)

Biochemical Deconstruction and Reconstruction of Nuclear Matrix Reveals the Layers of Nuclear Organization
por: Bihani, Ashish, et al.
Publicado: (2023)

Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes
por: Bagshaw, Andrew T.M.
Publicado: (2017)

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection
por: Sharma, Garima, et al.
Publicado: (2016)

Variation in recombination frequency and distribution across eukaryotes: patterns and processes
por: Stapley, Jessica, et al.
Publicado: (2017)

Host transcriptional response to SARS‐CoV‐2 infection in COVID‐19 patients
por: Singh, Nitesh Kumar, et al.
Publicado: (2021)

Comprehensive Comparative Analysis Sheds Light on the Patterns of Microsatellite Distribution across Birds Based on the Chromosome-Level Genomes
por: Feng, Kaize, et al.
Publicado: (2023)

Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
por: Subramanian, Subbaya, et al.
Publicado: (2003)

Comparison of the Microsatellite Distribution Patterns in the Genomes of Euarchontoglires at the Taxonomic Level
por: Song, Xuhao, et al.
Publicado: (2021)

EuMicroSatdb: A database for microsatellites in the sequenced genomes of eukaryotes
por: Aishwarya, Veenu, et al.
Publicado: (2007)

Analysis on Frequency and Density of Microsatellites in Coding Sequences of Several Eukaryotic Genomes
por: Li, Bin, et al.
Publicado: (2004)

Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
por: Shivaswamy, Sushma, et al.
Publicado: (2008)

The unique N-terminal region of Mycobacterium tuberculosis sigma factor A plays a dominant role in the essential function of this protein
por: Singha, Biplab, et al.
Publicado: (2023)

SARS-CoV-2 Variant Delta Potently Suppresses Innate Immune Response and Evades Interferon-Activated Antiviral Responses in Human Colon Epithelial Cells
por: Tandel, Dixit, et al.
Publicado: (2022)

Compositional patterns in the genomes of unicellular eukaryotes
por: Costantini, Maria, et al.
Publicado: (2013)

Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types
por: Fujimoto, Akihiro, et al.
Publicado: (2020)

Comparative genomics reveals selective distribution and domain organization of FYVE and PX domain proteins across eukaryotic lineages
por: Banerjee, Sumana, et al.
Publicado: (2010)

Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysis
por: Frades, Itziar, et al.
Publicado: (2015)

Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity
por: Sreenu, Vattipally B, et al.
Publicado: (2006)

Dyneins Across Eukaryotes: A Comparative Genomic Analysis
por: Wickstead, Bill, et al.
Publicado: (2007)

Centromere size scales with genome size across Eukaryotes
por: Plačková, Klára, et al.
Publicado: (2021)

Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection Without Mutations in the Spike Protein
por: Kulkarni, Onkar, et al.
Publicado: (2021)

Microsatellite repeat dynamics in mitochondrial genomes of phytopathogenic fungi: frequency and distribution in the genic and intergenic regions
por: Mahfooz, Sahil, et al.
Publicado: (2012)

Comparative Genome Analysis Across 128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution and Localized Evolution of Compartmentalized Genomes
por: Mandal, Kajal, et al.
Publicado: (2022)

Global patterns and rates of habitat transitions across the eukaryotic tree of life
por: Jamy, Mahwash, et al.
Publicado: (2022)

Evolution of Mutator transposable elements across eukaryotic diversity
por: Dupeyron, Mathilde, et al.
Publicado: (2019)

SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes
por: Andreson, Reidar, et al.
Publicado: (2006)

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom
por: Muffato, Matthieu, et al.
Publicado: (2023)

Estimating transcriptome complexities across eukaryotes
por: Titus-McQuillan, James E., et al.
Publicado: (2023)

Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae
por: Cavagnaro, Pablo F, et al.
Publicado: (2011)

Translational Control across Eukaryotes
por: Hernández, Greco
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_54vicd0qikup74tu131758t130