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Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice

BACKGROUND: Liver weight is a complex trait, controlled by polygenic factors and differs within populations. Dissecting the genetic architecture underlying these variations will facilitate the search for key role candidate genes involved directly in the hepatomegaly process and indirectly involved i...

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Autores principales: Abu‐Toamih Atamni, Hanifa J., Botzman, Maya, Mott, Richard, Gat‐Viks, Irit, Iraqi, Fuad A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6388055/
https://www.ncbi.nlm.nih.gov/pubmed/30891567
http://dx.doi.org/10.1002/ame2.12036
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author Abu‐Toamih Atamni, Hanifa J.
Botzman, Maya
Mott, Richard
Gat‐Viks, Irit
Iraqi, Fuad A.
author_facet Abu‐Toamih Atamni, Hanifa J.
Botzman, Maya
Mott, Richard
Gat‐Viks, Irit
Iraqi, Fuad A.
author_sort Abu‐Toamih Atamni, Hanifa J.
collection PubMed
description BACKGROUND: Liver weight is a complex trait, controlled by polygenic factors and differs within populations. Dissecting the genetic architecture underlying these variations will facilitate the search for key role candidate genes involved directly in the hepatomegaly process and indirectly involved in related diseases etiology. METHODS: Liver weight of 506 mice generated from 39 different Collaborative Cross (CC) lines with both sexes at age 20 weeks old was determined using an electronic balance. Genomic DNA of the CC lines was genotyped with high‐density single nucleotide polymorphic markers. RESULTS: Statistical analysis revealed a significant (P < 0.05) variation of liver weight between the CC lines, with broad sense heritability (H (2)) of 0.32 and genetic coefficient of variation (CV(G)) of 0.28. Subsequently, quantitative trait locus (QTL) mapping was performed, and results showed a significant QTL only for females on chromosome 8 at genomic interval 88.61‐93.38 Mb (4.77 Mb). Three suggestive QTL were mapped at chromosomes 4, 12 and 13. The four QTL were designated as LWL1‐LWL4 referring to liver weight loci 1‐4 on chromosomes 8, 4, 12 and 13, respectively. CONCLUSION: To our knowledge, this report presents, for the first time, the utilization of the CC for mapping QTL associated with baseline liver weight in mice. Our findings demonstrate that liver weight is a complex trait controlled by multiple genetic factors that differ significantly between sexes.
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spelling pubmed-63880552019-03-19 Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice Abu‐Toamih Atamni, Hanifa J. Botzman, Maya Mott, Richard Gat‐Viks, Irit Iraqi, Fuad A. Animal Model Exp Med Original Articles BACKGROUND: Liver weight is a complex trait, controlled by polygenic factors and differs within populations. Dissecting the genetic architecture underlying these variations will facilitate the search for key role candidate genes involved directly in the hepatomegaly process and indirectly involved in related diseases etiology. METHODS: Liver weight of 506 mice generated from 39 different Collaborative Cross (CC) lines with both sexes at age 20 weeks old was determined using an electronic balance. Genomic DNA of the CC lines was genotyped with high‐density single nucleotide polymorphic markers. RESULTS: Statistical analysis revealed a significant (P < 0.05) variation of liver weight between the CC lines, with broad sense heritability (H (2)) of 0.32 and genetic coefficient of variation (CV(G)) of 0.28. Subsequently, quantitative trait locus (QTL) mapping was performed, and results showed a significant QTL only for females on chromosome 8 at genomic interval 88.61‐93.38 Mb (4.77 Mb). Three suggestive QTL were mapped at chromosomes 4, 12 and 13. The four QTL were designated as LWL1‐LWL4 referring to liver weight loci 1‐4 on chromosomes 8, 4, 12 and 13, respectively. CONCLUSION: To our knowledge, this report presents, for the first time, the utilization of the CC for mapping QTL associated with baseline liver weight in mice. Our findings demonstrate that liver weight is a complex trait controlled by multiple genetic factors that differ significantly between sexes. John Wiley and Sons Inc. 2018-10-24 /pmc/articles/PMC6388055/ /pubmed/30891567 http://dx.doi.org/10.1002/ame2.12036 Text en © 2018 The Authors. Animal Models and Experimental Medicine published by John Wiley & Sons Australia, Ltd on behalf of The Chinese Association for Laboratory Animal Sciences This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Abu‐Toamih Atamni, Hanifa J.
Botzman, Maya
Mott, Richard
Gat‐Viks, Irit
Iraqi, Fuad A.
Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title_full Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title_fullStr Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title_full_unstemmed Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title_short Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice
title_sort mapping novel genetic loci associated with female liver weight variations using collaborative cross mice
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6388055/
https://www.ncbi.nlm.nih.gov/pubmed/30891567
http://dx.doi.org/10.1002/ame2.12036
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