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Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age

Introduction: Telomere length (TL) is causally related to aging and several age-related diseases. Specifically, the abundance of short telomeres and the rate of telomere shortening are strong determinants of cell homeostasis. Thus, tools for analyzing and manipulating TL data can vastly improve rese...

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Autores principales: Tsatsakis, Aristidis, Tsoukalas, Dimitrios, Fragkiadaki, Persefoni, Vakonaki, Elena, Tzatzarakis, Manolis, Sarandi, Evangelia, Nikitovic, Dragana, Tsilimidos, Gerasimos, Alegakis, Athanasios K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389611/
https://www.ncbi.nlm.nih.gov/pubmed/30838025
http://dx.doi.org/10.3389/fgene.2019.00084
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author Tsatsakis, Aristidis
Tsoukalas, Dimitrios
Fragkiadaki, Persefoni
Vakonaki, Elena
Tzatzarakis, Manolis
Sarandi, Evangelia
Nikitovic, Dragana
Tsilimidos, Gerasimos
Alegakis, Athanasios K.
author_facet Tsatsakis, Aristidis
Tsoukalas, Dimitrios
Fragkiadaki, Persefoni
Vakonaki, Elena
Tzatzarakis, Manolis
Sarandi, Evangelia
Nikitovic, Dragana
Tsilimidos, Gerasimos
Alegakis, Athanasios K.
author_sort Tsatsakis, Aristidis
collection PubMed
description Introduction: Telomere length (TL) is causally related to aging and several age-related diseases. Specifically, the abundance of short telomeres and the rate of telomere shortening are strong determinants of cell homeostasis. Thus, tools for analyzing and manipulating TL data can vastly improve research focused on aging. Aim: In this study, we developed a semi-automated worksheet, BIOTEL, to generate individual and group TL statistics and provide a crude estimation of biological age. Results: Data from the Telomere Length Database Project (TLDP) were implemented to the spreadsheet to produce TL statistics. 150 participants were included, and their age was from 21 to 82 years, and the sex distribution ratio was 52.3%: 47.7% (male: female). Initially, we analyzed the fluorescence intensities of telomeres that were measured on metaphase spread leukocytes using three-dimensional (3D) quantitative-fluorescent in situ hybridization (Q-FISH) procedures (3D DNA FISH) with a (C3TA2)3 peptide nucleic acid (PNA) probe. Raw data of fluorescence intensities, demographic data and medical records from the participants were imported into the worksheet. Basic statistical analyses of TL data were provided through BIOTEL, including TL percentiles, specialized charts for TL distribution including the percentage of critically short telomeres (< 3,000 kilobases), individual telomere profiles, and graphs of biological age vs. chronological age. Conclusion: BIOTEL ver. 2.4 is a functional semi-automated worksheet that calculates a wide range of TL statistics, thus a useful tool with applications in research of telomeres and biological age estimation.
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spelling pubmed-63896112019-03-05 Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age Tsatsakis, Aristidis Tsoukalas, Dimitrios Fragkiadaki, Persefoni Vakonaki, Elena Tzatzarakis, Manolis Sarandi, Evangelia Nikitovic, Dragana Tsilimidos, Gerasimos Alegakis, Athanasios K. Front Genet Genetics Introduction: Telomere length (TL) is causally related to aging and several age-related diseases. Specifically, the abundance of short telomeres and the rate of telomere shortening are strong determinants of cell homeostasis. Thus, tools for analyzing and manipulating TL data can vastly improve research focused on aging. Aim: In this study, we developed a semi-automated worksheet, BIOTEL, to generate individual and group TL statistics and provide a crude estimation of biological age. Results: Data from the Telomere Length Database Project (TLDP) were implemented to the spreadsheet to produce TL statistics. 150 participants were included, and their age was from 21 to 82 years, and the sex distribution ratio was 52.3%: 47.7% (male: female). Initially, we analyzed the fluorescence intensities of telomeres that were measured on metaphase spread leukocytes using three-dimensional (3D) quantitative-fluorescent in situ hybridization (Q-FISH) procedures (3D DNA FISH) with a (C3TA2)3 peptide nucleic acid (PNA) probe. Raw data of fluorescence intensities, demographic data and medical records from the participants were imported into the worksheet. Basic statistical analyses of TL data were provided through BIOTEL, including TL percentiles, specialized charts for TL distribution including the percentage of critically short telomeres (< 3,000 kilobases), individual telomere profiles, and graphs of biological age vs. chronological age. Conclusion: BIOTEL ver. 2.4 is a functional semi-automated worksheet that calculates a wide range of TL statistics, thus a useful tool with applications in research of telomeres and biological age estimation. Frontiers Media S.A. 2019-02-19 /pmc/articles/PMC6389611/ /pubmed/30838025 http://dx.doi.org/10.3389/fgene.2019.00084 Text en Copyright © 2019 Tsatsakis, Tsoukalas, Fragkiadaki, Vakonaki, Tzatzarakis, Sarandi, Nikitovic, Tsilimidos and Alegakis. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Tsatsakis, Aristidis
Tsoukalas, Dimitrios
Fragkiadaki, Persefoni
Vakonaki, Elena
Tzatzarakis, Manolis
Sarandi, Evangelia
Nikitovic, Dragana
Tsilimidos, Gerasimos
Alegakis, Athanasios K.
Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title_full Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title_fullStr Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title_full_unstemmed Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title_short Developing BIOTEL: A Semi-Automated Spreadsheet for Estimating Telomere Length and Biological Age
title_sort developing biotel: a semi-automated spreadsheet for estimating telomere length and biological age
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389611/
https://www.ncbi.nlm.nih.gov/pubmed/30838025
http://dx.doi.org/10.3389/fgene.2019.00084
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