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Deep learning in head & neck cancer outcome prediction

Traditional radiomics involves the extraction of quantitative texture features from medical images in an attempt to determine correlations with clinical endpoints. We hypothesize that convolutional neural networks (CNNs) could enhance the performance of traditional radiomics, by detecting image patt...

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Autores principales: Diamant, André, Chatterjee, Avishek, Vallières, Martin, Shenouda, George, Seuntjens, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391436/
https://www.ncbi.nlm.nih.gov/pubmed/30809047
http://dx.doi.org/10.1038/s41598-019-39206-1
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author Diamant, André
Chatterjee, Avishek
Vallières, Martin
Shenouda, George
Seuntjens, Jan
author_facet Diamant, André
Chatterjee, Avishek
Vallières, Martin
Shenouda, George
Seuntjens, Jan
author_sort Diamant, André
collection PubMed
description Traditional radiomics involves the extraction of quantitative texture features from medical images in an attempt to determine correlations with clinical endpoints. We hypothesize that convolutional neural networks (CNNs) could enhance the performance of traditional radiomics, by detecting image patterns that may not be covered by a traditional radiomic framework. We test this hypothesis by training a CNN to predict treatment outcomes of patients with head and neck squamous cell carcinoma, based solely on their pre-treatment computed tomography image. The training (194 patients) and validation sets (106 patients), which are mutually independent and include 4 institutions, come from The Cancer Imaging Archive. When compared to a traditional radiomic framework applied to the same patient cohort, our method results in a AUC of 0.88 in predicting distant metastasis. When combining our model with the previous model, the AUC improves to 0.92. Our framework yields models that are shown to explicitly recognize traditional radiomic features, be directly visualized and perform accurate outcome prediction.
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spelling pubmed-63914362019-03-01 Deep learning in head & neck cancer outcome prediction Diamant, André Chatterjee, Avishek Vallières, Martin Shenouda, George Seuntjens, Jan Sci Rep Article Traditional radiomics involves the extraction of quantitative texture features from medical images in an attempt to determine correlations with clinical endpoints. We hypothesize that convolutional neural networks (CNNs) could enhance the performance of traditional radiomics, by detecting image patterns that may not be covered by a traditional radiomic framework. We test this hypothesis by training a CNN to predict treatment outcomes of patients with head and neck squamous cell carcinoma, based solely on their pre-treatment computed tomography image. The training (194 patients) and validation sets (106 patients), which are mutually independent and include 4 institutions, come from The Cancer Imaging Archive. When compared to a traditional radiomic framework applied to the same patient cohort, our method results in a AUC of 0.88 in predicting distant metastasis. When combining our model with the previous model, the AUC improves to 0.92. Our framework yields models that are shown to explicitly recognize traditional radiomic features, be directly visualized and perform accurate outcome prediction. Nature Publishing Group UK 2019-02-26 /pmc/articles/PMC6391436/ /pubmed/30809047 http://dx.doi.org/10.1038/s41598-019-39206-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Diamant, André
Chatterjee, Avishek
Vallières, Martin
Shenouda, George
Seuntjens, Jan
Deep learning in head & neck cancer outcome prediction
title Deep learning in head & neck cancer outcome prediction
title_full Deep learning in head & neck cancer outcome prediction
title_fullStr Deep learning in head & neck cancer outcome prediction
title_full_unstemmed Deep learning in head & neck cancer outcome prediction
title_short Deep learning in head & neck cancer outcome prediction
title_sort deep learning in head & neck cancer outcome prediction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391436/
https://www.ncbi.nlm.nih.gov/pubmed/30809047
http://dx.doi.org/10.1038/s41598-019-39206-1
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