Cargando…

Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils

Tundra ecosystems are typically carbon (C) rich but nitrogen (N) limited. Since biological N(2) fixation is the major source of biologically available N, the soil N(2)-fixing (i.e., diazotrophic) community serves as an essential N supplier to the tundra ecosystem. Recent climate warming has induced...

Descripción completa

Detalles Bibliográficos
Autores principales: Feng, Jiajie, Penton, C. Ryan, He, Zhili, Van Nostrand, Joy D., Yuan, Mengting M., Wu, Liyou, Wang, Cong, Qin, Yujia, Shi, Zhou J., Guo, Xue, Schuur, Edward A. G., Luo, Yiqi, Bracho, Rosvel, Konstantinidis, Konstantinos T., Cole, James R., Tiedje, James M., Yang, Yunfeng, Zhou, Jizhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391920/
https://www.ncbi.nlm.nih.gov/pubmed/30808694
http://dx.doi.org/10.1128/mBio.02521-18
_version_ 1783398390418112512
author Feng, Jiajie
Penton, C. Ryan
He, Zhili
Van Nostrand, Joy D.
Yuan, Mengting M.
Wu, Liyou
Wang, Cong
Qin, Yujia
Shi, Zhou J.
Guo, Xue
Schuur, Edward A. G.
Luo, Yiqi
Bracho, Rosvel
Konstantinidis, Konstantinos T.
Cole, James R.
Tiedje, James M.
Yang, Yunfeng
Zhou, Jizhong
author_facet Feng, Jiajie
Penton, C. Ryan
He, Zhili
Van Nostrand, Joy D.
Yuan, Mengting M.
Wu, Liyou
Wang, Cong
Qin, Yujia
Shi, Zhou J.
Guo, Xue
Schuur, Edward A. G.
Luo, Yiqi
Bracho, Rosvel
Konstantinidis, Konstantinos T.
Cole, James R.
Tiedje, James M.
Yang, Yunfeng
Zhou, Jizhong
author_sort Feng, Jiajie
collection PubMed
description Tundra ecosystems are typically carbon (C) rich but nitrogen (N) limited. Since biological N(2) fixation is the major source of biologically available N, the soil N(2)-fixing (i.e., diazotrophic) community serves as an essential N supplier to the tundra ecosystem. Recent climate warming has induced deeper permafrost thaw and adversely affected C sequestration, which is modulated by N availability. Therefore, it is crucial to examine the responses of diazotrophic communities to warming across the depths of tundra soils. Herein, we carried out one of the deepest sequencing efforts of nitrogenase gene (nifH) to investigate how 5 years of experimental winter warming affects Alaskan soil diazotrophic community composition and abundance spanning both the organic and mineral layers. Although soil depth had a stronger influence on diazotrophic community composition than warming, warming significantly (P < 0.05) enhanced diazotrophic abundance by 86.3% and aboveground plant biomass by 25.2%. Diazotrophic composition in the middle and lower organic layers, detected by nifH sequencing and a microarray-based tool (GeoChip), was markedly altered, with an increase of α-diversity. Changes in diazotrophic abundance and composition significantly correlated with soil moisture, soil thaw duration, and plant biomass, as shown by structural equation modeling analyses. Therefore, more abundant diazotrophic communities induced by warming may potentially serve as an important mechanism for supplementing biologically available N in this tundra ecosystem.
format Online
Article
Text
id pubmed-6391920
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-63919202019-03-04 Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils Feng, Jiajie Penton, C. Ryan He, Zhili Van Nostrand, Joy D. Yuan, Mengting M. Wu, Liyou Wang, Cong Qin, Yujia Shi, Zhou J. Guo, Xue Schuur, Edward A. G. Luo, Yiqi Bracho, Rosvel Konstantinidis, Konstantinos T. Cole, James R. Tiedje, James M. Yang, Yunfeng Zhou, Jizhong mBio Research Article Tundra ecosystems are typically carbon (C) rich but nitrogen (N) limited. Since biological N(2) fixation is the major source of biologically available N, the soil N(2)-fixing (i.e., diazotrophic) community serves as an essential N supplier to the tundra ecosystem. Recent climate warming has induced deeper permafrost thaw and adversely affected C sequestration, which is modulated by N availability. Therefore, it is crucial to examine the responses of diazotrophic communities to warming across the depths of tundra soils. Herein, we carried out one of the deepest sequencing efforts of nitrogenase gene (nifH) to investigate how 5 years of experimental winter warming affects Alaskan soil diazotrophic community composition and abundance spanning both the organic and mineral layers. Although soil depth had a stronger influence on diazotrophic community composition than warming, warming significantly (P < 0.05) enhanced diazotrophic abundance by 86.3% and aboveground plant biomass by 25.2%. Diazotrophic composition in the middle and lower organic layers, detected by nifH sequencing and a microarray-based tool (GeoChip), was markedly altered, with an increase of α-diversity. Changes in diazotrophic abundance and composition significantly correlated with soil moisture, soil thaw duration, and plant biomass, as shown by structural equation modeling analyses. Therefore, more abundant diazotrophic communities induced by warming may potentially serve as an important mechanism for supplementing biologically available N in this tundra ecosystem. American Society for Microbiology 2019-02-26 /pmc/articles/PMC6391920/ /pubmed/30808694 http://dx.doi.org/10.1128/mBio.02521-18 Text en Copyright © 2019 Feng et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Feng, Jiajie
Penton, C. Ryan
He, Zhili
Van Nostrand, Joy D.
Yuan, Mengting M.
Wu, Liyou
Wang, Cong
Qin, Yujia
Shi, Zhou J.
Guo, Xue
Schuur, Edward A. G.
Luo, Yiqi
Bracho, Rosvel
Konstantinidis, Konstantinos T.
Cole, James R.
Tiedje, James M.
Yang, Yunfeng
Zhou, Jizhong
Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title_full Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title_fullStr Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title_full_unstemmed Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title_short Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils
title_sort long-term warming in alaska enlarges the diazotrophic community in deep soils
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391920/
https://www.ncbi.nlm.nih.gov/pubmed/30808694
http://dx.doi.org/10.1128/mBio.02521-18
work_keys_str_mv AT fengjiajie longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT pentoncryan longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT hezhili longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT vannostrandjoyd longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT yuanmengtingm longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT wuliyou longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT wangcong longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT qinyujia longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT shizhouj longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT guoxue longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT schuuredwardag longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT luoyiqi longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT brachorosvel longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT konstantinidiskonstantinost longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT colejamesr longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT tiedjejamesm longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT yangyunfeng longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils
AT zhoujizhong longtermwarminginalaskaenlargesthediazotrophiccommunityindeepsoils