Cargando…

Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution

The rate with which labile backbone hydrogen atoms in proteins exchange with the solvent has long been used to probe protein interactions in aqueous solutions. Arginine, an essential amino acid found in many interaction interfaces, is capable of an impressive range of interactions via its guanidiniu...

Descripción completa

Detalles Bibliográficos
Autores principales: Mackenzie, Harold W., Hansen, D. Flemming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391956/
https://www.ncbi.nlm.nih.gov/pubmed/30085401
http://dx.doi.org/10.1002/cphc.201800598
_version_ 1783398398916820992
author Mackenzie, Harold W.
Hansen, D. Flemming
author_facet Mackenzie, Harold W.
Hansen, D. Flemming
author_sort Mackenzie, Harold W.
collection PubMed
description The rate with which labile backbone hydrogen atoms in proteins exchange with the solvent has long been used to probe protein interactions in aqueous solutions. Arginine, an essential amino acid found in many interaction interfaces, is capable of an impressive range of interactions via its guanidinium group. The hydrogen exchange rate of the guanidinium hydrogens therefore becomes an important measure to quantify side‐chain interactions. Herein we present an NMR method to quantify the hydrogen exchange rates of arginine side‐chain (1)H(ϵ) protons and thus present a method to gauge the strength of arginine side‐chain interactions. The method employs (13)C‐detection and the one‐bond deuterium isotope shift observed for (15)N(ϵ) to generate two exchanging species in (1)H(2)O/(2)H(2)O mixtures. An application to the protein T4 Lysozyme is shown, where protection factors calculated from the obtained exchange rates correlate well with the interactions observed in the crystal structure. The methodology presented provides an important step towards characterising interactions of arginine side‐chains in enzymes, in phase separation, and in protein interaction interfaces in general.
format Online
Article
Text
id pubmed-6391956
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-63919562019-03-07 Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution Mackenzie, Harold W. Hansen, D. Flemming Chemphyschem Articles The rate with which labile backbone hydrogen atoms in proteins exchange with the solvent has long been used to probe protein interactions in aqueous solutions. Arginine, an essential amino acid found in many interaction interfaces, is capable of an impressive range of interactions via its guanidinium group. The hydrogen exchange rate of the guanidinium hydrogens therefore becomes an important measure to quantify side‐chain interactions. Herein we present an NMR method to quantify the hydrogen exchange rates of arginine side‐chain (1)H(ϵ) protons and thus present a method to gauge the strength of arginine side‐chain interactions. The method employs (13)C‐detection and the one‐bond deuterium isotope shift observed for (15)N(ϵ) to generate two exchanging species in (1)H(2)O/(2)H(2)O mixtures. An application to the protein T4 Lysozyme is shown, where protection factors calculated from the obtained exchange rates correlate well with the interactions observed in the crystal structure. The methodology presented provides an important step towards characterising interactions of arginine side‐chains in enzymes, in phase separation, and in protein interaction interfaces in general. John Wiley and Sons Inc. 2018-09-24 2019-01-21 /pmc/articles/PMC6391956/ /pubmed/30085401 http://dx.doi.org/10.1002/cphc.201800598 Text en © 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Mackenzie, Harold W.
Hansen, D. Flemming
Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title_full Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title_fullStr Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title_full_unstemmed Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title_short Arginine Side‐Chain Hydrogen Exchange: Quantifying Arginine Side‐Chain Interactions in Solution
title_sort arginine side‐chain hydrogen exchange: quantifying arginine side‐chain interactions in solution
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391956/
https://www.ncbi.nlm.nih.gov/pubmed/30085401
http://dx.doi.org/10.1002/cphc.201800598
work_keys_str_mv AT mackenzieharoldw argininesidechainhydrogenexchangequantifyingargininesidechaininteractionsinsolution
AT hansendflemming argininesidechainhydrogenexchangequantifyingargininesidechaininteractionsinsolution