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High‐Throughput Metabolomics by 1D NMR

Metabolomics deals with the whole ensemble of metabolites (the metabolome). As one of the ‐omic sciences, it relates to biology, physiology, pathology and medicine; but metabolites are chemical entities, small organic molecules or inorganic ions. Therefore, their proper identification and quantitati...

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Autores principales: Vignoli, Alessia, Ghini, Veronica, Meoni, Gaia, Licari, Cristina, Takis, Panteleimon G., Tenori, Leonardo, Turano, Paola, Luchinat, Claudio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391965/
https://www.ncbi.nlm.nih.gov/pubmed/29999221
http://dx.doi.org/10.1002/anie.201804736
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author Vignoli, Alessia
Ghini, Veronica
Meoni, Gaia
Licari, Cristina
Takis, Panteleimon G.
Tenori, Leonardo
Turano, Paola
Luchinat, Claudio
author_facet Vignoli, Alessia
Ghini, Veronica
Meoni, Gaia
Licari, Cristina
Takis, Panteleimon G.
Tenori, Leonardo
Turano, Paola
Luchinat, Claudio
author_sort Vignoli, Alessia
collection PubMed
description Metabolomics deals with the whole ensemble of metabolites (the metabolome). As one of the ‐omic sciences, it relates to biology, physiology, pathology and medicine; but metabolites are chemical entities, small organic molecules or inorganic ions. Therefore, their proper identification and quantitation in complex biological matrices requires a solid chemical ground. With respect to for example, DNA, metabolites are much more prone to oxidation or enzymatic degradation: we can reconstruct large parts of a mammoth's genome from a small specimen, but we are unable to do the same with its metabolome, which was probably largely degraded a few hours after the animal's death. Thus, we need standard operating procedures, good chemical skills in sample preparation for storage and subsequent analysis, accurate analytical procedures, a broad knowledge of chemometrics and advanced statistical tools, and a good knowledge of at least one of the two metabolomic techniques, MS or NMR. All these skills are traditionally cultivated by chemists. Here we focus on metabolomics from the chemical standpoint and restrict ourselves to NMR. From the analytical point of view, NMR has pros and cons but does provide a peculiar holistic perspective that may speak for its future adoption as a population‐wide health screening technique.
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spelling pubmed-63919652019-03-07 High‐Throughput Metabolomics by 1D NMR Vignoli, Alessia Ghini, Veronica Meoni, Gaia Licari, Cristina Takis, Panteleimon G. Tenori, Leonardo Turano, Paola Luchinat, Claudio Angew Chem Int Ed Engl Reviews Metabolomics deals with the whole ensemble of metabolites (the metabolome). As one of the ‐omic sciences, it relates to biology, physiology, pathology and medicine; but metabolites are chemical entities, small organic molecules or inorganic ions. Therefore, their proper identification and quantitation in complex biological matrices requires a solid chemical ground. With respect to for example, DNA, metabolites are much more prone to oxidation or enzymatic degradation: we can reconstruct large parts of a mammoth's genome from a small specimen, but we are unable to do the same with its metabolome, which was probably largely degraded a few hours after the animal's death. Thus, we need standard operating procedures, good chemical skills in sample preparation for storage and subsequent analysis, accurate analytical procedures, a broad knowledge of chemometrics and advanced statistical tools, and a good knowledge of at least one of the two metabolomic techniques, MS or NMR. All these skills are traditionally cultivated by chemists. Here we focus on metabolomics from the chemical standpoint and restrict ourselves to NMR. From the analytical point of view, NMR has pros and cons but does provide a peculiar holistic perspective that may speak for its future adoption as a population‐wide health screening technique. John Wiley and Sons Inc. 2018-11-11 2019-01-21 /pmc/articles/PMC6391965/ /pubmed/29999221 http://dx.doi.org/10.1002/anie.201804736 Text en © 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Reviews
Vignoli, Alessia
Ghini, Veronica
Meoni, Gaia
Licari, Cristina
Takis, Panteleimon G.
Tenori, Leonardo
Turano, Paola
Luchinat, Claudio
High‐Throughput Metabolomics by 1D NMR
title High‐Throughput Metabolomics by 1D NMR
title_full High‐Throughput Metabolomics by 1D NMR
title_fullStr High‐Throughput Metabolomics by 1D NMR
title_full_unstemmed High‐Throughput Metabolomics by 1D NMR
title_short High‐Throughput Metabolomics by 1D NMR
title_sort high‐throughput metabolomics by 1d nmr
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391965/
https://www.ncbi.nlm.nih.gov/pubmed/29999221
http://dx.doi.org/10.1002/anie.201804736
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