Cargando…

Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namely Panicum virgatum (switchgrass), species of the genera Miscanthu...

Descripción completa

Detalles Bibliográficos
Autores principales: Clifton‐Brown, John, Harfouche, Antoine, Casler, Michael D., Dylan Jones, Huw, Macalpine, William J., Murphy‐Bokern, Donal, Smart, Lawrence B., Adler, Anneli, Ashman, Chris, Awty‐Carroll, Danny, Bastien, Catherine, Bopper, Sebastian, Botnari, Vasile, Brancourt‐Hulmel, Maryse, Chen, Zhiyong, Clark, Lindsay V., Cosentino, Salvatore, Dalton, Sue, Davey, Chris, Dolstra, Oene, Donnison, Iain, Flavell, Richard, Greef, Joerg, Hanley, Steve, Hastings, Astley, Hertzberg, Magnus, Hsu, Tsai‐Wen, Huang, Lin S., Iurato, Antonella, Jensen, Elaine, Jin, Xiaoli, Jørgensen, Uffe, Kiesel, Andreas, Kim, Do‐Soon, Liu, Jianxiu, McCalmont, Jon P., McMahon, Bernard G., Mos, Michal, Robson, Paul, Sacks, Erik J., Sandu, Anatolii, Scalici, Giovanni, Schwarz, Kai, Scordia, Danilo, Shafiei, Reza, Shield, Ian, Slavov, Gancho, Stanton, Brian J., Swaminathan, Kankshita, Taylor, Gail, Torres, Andres F., Trindade, Luisa M., Tschaplinski, Timothy, Tuskan, Gerald A., Yamada, Toshihiko, Yeon Yu, Chang, Zalesny, Ronald S., Zong, Junqin, Lewandowski, Iris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392185/
https://www.ncbi.nlm.nih.gov/pubmed/30854028
http://dx.doi.org/10.1111/gcbb.12566
_version_ 1783398427175944192
author Clifton‐Brown, John
Harfouche, Antoine
Casler, Michael D.
Dylan Jones, Huw
Macalpine, William J.
Murphy‐Bokern, Donal
Smart, Lawrence B.
Adler, Anneli
Ashman, Chris
Awty‐Carroll, Danny
Bastien, Catherine
Bopper, Sebastian
Botnari, Vasile
Brancourt‐Hulmel, Maryse
Chen, Zhiyong
Clark, Lindsay V.
Cosentino, Salvatore
Dalton, Sue
Davey, Chris
Dolstra, Oene
Donnison, Iain
Flavell, Richard
Greef, Joerg
Hanley, Steve
Hastings, Astley
Hertzberg, Magnus
Hsu, Tsai‐Wen
Huang, Lin S.
Iurato, Antonella
Jensen, Elaine
Jin, Xiaoli
Jørgensen, Uffe
Kiesel, Andreas
Kim, Do‐Soon
Liu, Jianxiu
McCalmont, Jon P.
McMahon, Bernard G.
Mos, Michal
Robson, Paul
Sacks, Erik J.
Sandu, Anatolii
Scalici, Giovanni
Schwarz, Kai
Scordia, Danilo
Shafiei, Reza
Shield, Ian
Slavov, Gancho
Stanton, Brian J.
Swaminathan, Kankshita
Taylor, Gail
Torres, Andres F.
Trindade, Luisa M.
Tschaplinski, Timothy
Tuskan, Gerald A.
Yamada, Toshihiko
Yeon Yu, Chang
Zalesny, Ronald S.
Zong, Junqin
Lewandowski, Iris
author_facet Clifton‐Brown, John
Harfouche, Antoine
Casler, Michael D.
Dylan Jones, Huw
Macalpine, William J.
Murphy‐Bokern, Donal
Smart, Lawrence B.
Adler, Anneli
Ashman, Chris
Awty‐Carroll, Danny
Bastien, Catherine
Bopper, Sebastian
Botnari, Vasile
Brancourt‐Hulmel, Maryse
Chen, Zhiyong
Clark, Lindsay V.
Cosentino, Salvatore
Dalton, Sue
Davey, Chris
Dolstra, Oene
Donnison, Iain
Flavell, Richard
Greef, Joerg
Hanley, Steve
Hastings, Astley
Hertzberg, Magnus
Hsu, Tsai‐Wen
Huang, Lin S.
Iurato, Antonella
Jensen, Elaine
Jin, Xiaoli
Jørgensen, Uffe
Kiesel, Andreas
Kim, Do‐Soon
Liu, Jianxiu
McCalmont, Jon P.
McMahon, Bernard G.
Mos, Michal
Robson, Paul
Sacks, Erik J.
Sandu, Anatolii
Scalici, Giovanni
Schwarz, Kai
Scordia, Danilo
Shafiei, Reza
Shield, Ian
Slavov, Gancho
Stanton, Brian J.
Swaminathan, Kankshita
Taylor, Gail
Torres, Andres F.
Trindade, Luisa M.
Tschaplinski, Timothy
Tuskan, Gerald A.
Yamada, Toshihiko
Yeon Yu, Chang
Zalesny, Ronald S.
Zong, Junqin
Lewandowski, Iris
author_sort Clifton‐Brown, John
collection PubMed
description Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namely Panicum virgatum (switchgrass), species of the genera Miscanthus (miscanthus), Salix (willow) and Populus (poplar). For each crop, we report on the size of germplasm collections, the efforts to date to phenotype and genotype, the diversity available for breeding and on the scale of breeding work as indicated by number of attempted crosses. We also report on the development of faster and more precise breeding using molecular breeding techniques. Poplar is the model tree for genetic studies and is furthest ahead in terms of biological knowledge and genetic resources. Linkage maps, transgenesis and genome editing methods are now being used in commercially focused poplar breeding. These are in development in switchgrass, miscanthus and willow generating large genetic and phenotypic data sets requiring concomitant efforts in informatics to create summaries that can be accessed and used by practical breeders. Cultivars of switchgrass and miscanthus can be seed‐based synthetic populations, semihybrids or clones. Willow and poplar cultivars are commercially deployed as clones. At local and regional level, the most advanced cultivars in each crop are at technology readiness levels which could be scaled to planting rates of thousands of hectares per year in about 5 years with existing commercial developers. Investment in further development of better cultivars is subject to current market failure and the long breeding cycles. We conclude that sustained public investment in breeding plays a key role in delivering future mass‐scale deployment of PBCs.
format Online
Article
Text
id pubmed-6392185
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-63921852019-03-07 Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar Clifton‐Brown, John Harfouche, Antoine Casler, Michael D. Dylan Jones, Huw Macalpine, William J. Murphy‐Bokern, Donal Smart, Lawrence B. Adler, Anneli Ashman, Chris Awty‐Carroll, Danny Bastien, Catherine Bopper, Sebastian Botnari, Vasile Brancourt‐Hulmel, Maryse Chen, Zhiyong Clark, Lindsay V. Cosentino, Salvatore Dalton, Sue Davey, Chris Dolstra, Oene Donnison, Iain Flavell, Richard Greef, Joerg Hanley, Steve Hastings, Astley Hertzberg, Magnus Hsu, Tsai‐Wen Huang, Lin S. Iurato, Antonella Jensen, Elaine Jin, Xiaoli Jørgensen, Uffe Kiesel, Andreas Kim, Do‐Soon Liu, Jianxiu McCalmont, Jon P. McMahon, Bernard G. Mos, Michal Robson, Paul Sacks, Erik J. Sandu, Anatolii Scalici, Giovanni Schwarz, Kai Scordia, Danilo Shafiei, Reza Shield, Ian Slavov, Gancho Stanton, Brian J. Swaminathan, Kankshita Taylor, Gail Torres, Andres F. Trindade, Luisa M. Tschaplinski, Timothy Tuskan, Gerald A. Yamada, Toshihiko Yeon Yu, Chang Zalesny, Ronald S. Zong, Junqin Lewandowski, Iris Glob Change Biol Bioenergy Platform Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namely Panicum virgatum (switchgrass), species of the genera Miscanthus (miscanthus), Salix (willow) and Populus (poplar). For each crop, we report on the size of germplasm collections, the efforts to date to phenotype and genotype, the diversity available for breeding and on the scale of breeding work as indicated by number of attempted crosses. We also report on the development of faster and more precise breeding using molecular breeding techniques. Poplar is the model tree for genetic studies and is furthest ahead in terms of biological knowledge and genetic resources. Linkage maps, transgenesis and genome editing methods are now being used in commercially focused poplar breeding. These are in development in switchgrass, miscanthus and willow generating large genetic and phenotypic data sets requiring concomitant efforts in informatics to create summaries that can be accessed and used by practical breeders. Cultivars of switchgrass and miscanthus can be seed‐based synthetic populations, semihybrids or clones. Willow and poplar cultivars are commercially deployed as clones. At local and regional level, the most advanced cultivars in each crop are at technology readiness levels which could be scaled to planting rates of thousands of hectares per year in about 5 years with existing commercial developers. Investment in further development of better cultivars is subject to current market failure and the long breeding cycles. We conclude that sustained public investment in breeding plays a key role in delivering future mass‐scale deployment of PBCs. John Wiley and Sons Inc. 2018-10-23 2019-01 /pmc/articles/PMC6392185/ /pubmed/30854028 http://dx.doi.org/10.1111/gcbb.12566 Text en © 2018 The Authors. GCB Bioenergy Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Platform
Clifton‐Brown, John
Harfouche, Antoine
Casler, Michael D.
Dylan Jones, Huw
Macalpine, William J.
Murphy‐Bokern, Donal
Smart, Lawrence B.
Adler, Anneli
Ashman, Chris
Awty‐Carroll, Danny
Bastien, Catherine
Bopper, Sebastian
Botnari, Vasile
Brancourt‐Hulmel, Maryse
Chen, Zhiyong
Clark, Lindsay V.
Cosentino, Salvatore
Dalton, Sue
Davey, Chris
Dolstra, Oene
Donnison, Iain
Flavell, Richard
Greef, Joerg
Hanley, Steve
Hastings, Astley
Hertzberg, Magnus
Hsu, Tsai‐Wen
Huang, Lin S.
Iurato, Antonella
Jensen, Elaine
Jin, Xiaoli
Jørgensen, Uffe
Kiesel, Andreas
Kim, Do‐Soon
Liu, Jianxiu
McCalmont, Jon P.
McMahon, Bernard G.
Mos, Michal
Robson, Paul
Sacks, Erik J.
Sandu, Anatolii
Scalici, Giovanni
Schwarz, Kai
Scordia, Danilo
Shafiei, Reza
Shield, Ian
Slavov, Gancho
Stanton, Brian J.
Swaminathan, Kankshita
Taylor, Gail
Torres, Andres F.
Trindade, Luisa M.
Tschaplinski, Timothy
Tuskan, Gerald A.
Yamada, Toshihiko
Yeon Yu, Chang
Zalesny, Ronald S.
Zong, Junqin
Lewandowski, Iris
Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title_full Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title_fullStr Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title_full_unstemmed Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title_short Breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
title_sort breeding progress and preparedness for mass‐scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
topic Platform
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392185/
https://www.ncbi.nlm.nih.gov/pubmed/30854028
http://dx.doi.org/10.1111/gcbb.12566
work_keys_str_mv AT cliftonbrownjohn breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT harfoucheantoine breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT caslermichaeld breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT dylanjoneshuw breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT macalpinewilliamj breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT murphybokerndonal breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT smartlawrenceb breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT adleranneli breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT ashmanchris breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT awtycarrolldanny breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT bastiencatherine breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT boppersebastian breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT botnarivasile breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT brancourthulmelmaryse breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT chenzhiyong breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT clarklindsayv breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT cosentinosalvatore breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT daltonsue breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT daveychris breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT dolstraoene breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT donnisoniain breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT flavellrichard breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT greefjoerg breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT hanleysteve breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT hastingsastley breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT hertzbergmagnus breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT hsutsaiwen breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT huanglins breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT iuratoantonella breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT jensenelaine breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT jinxiaoli breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT jørgensenuffe breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT kieselandreas breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT kimdosoon breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT liujianxiu breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT mccalmontjonp breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT mcmahonbernardg breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT mosmichal breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT robsonpaul breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT sackserikj breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT sanduanatolii breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT scalicigiovanni breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT schwarzkai breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT scordiadanilo breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT shafieireza breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT shieldian breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT slavovgancho breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT stantonbrianj breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT swaminathankankshita breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT taylorgail breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT torresandresf breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT trindadeluisam breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT tschaplinskitimothy breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT tuskangeralda breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT yamadatoshihiko breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT yeonyuchang breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT zalesnyronalds breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT zongjunqin breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar
AT lewandowskiiris breedingprogressandpreparednessformassscaledeploymentofperenniallignocellulosicbiomasscropsswitchgrassmiscanthuswillowandpoplar