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SPECIES: A platform for the exploration of ecological data

The modeling of ecological data that include both abiotic and biotic factors is fundamental to our understanding of ecosystems. Repositories of biodiversity data, such as GBIF, iDigBio, Atlas of Living Australia, and SNIB (Mexico's National System of Biodiversity Information), contain a great d...

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Autores principales: Stephens, Christopher R., Sierra‐Alcocer, Raúl, González‐Salazar, Constantino, Barrios, Juan M., Salazar Carrillo, Juan Carlos, Robredo Ezquivelzeta, Everardo, del Callejo Canal, Enrique
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392378/
https://www.ncbi.nlm.nih.gov/pubmed/30847061
http://dx.doi.org/10.1002/ece3.4800
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author Stephens, Christopher R.
Sierra‐Alcocer, Raúl
González‐Salazar, Constantino
Barrios, Juan M.
Salazar Carrillo, Juan Carlos
Robredo Ezquivelzeta, Everardo
del Callejo Canal, Enrique
author_facet Stephens, Christopher R.
Sierra‐Alcocer, Raúl
González‐Salazar, Constantino
Barrios, Juan M.
Salazar Carrillo, Juan Carlos
Robredo Ezquivelzeta, Everardo
del Callejo Canal, Enrique
author_sort Stephens, Christopher R.
collection PubMed
description The modeling of ecological data that include both abiotic and biotic factors is fundamental to our understanding of ecosystems. Repositories of biodiversity data, such as GBIF, iDigBio, Atlas of Living Australia, and SNIB (Mexico's National System of Biodiversity Information), contain a great deal of information that can lead to knowledge discovery about ecosystems. However, there is a lack of tools with which to efficiently extract such knowledge. In this paper, we present SPECIES, an open, web‐based platform designed to extract implicit information contained in large scale sets of ecological data. SPECIES is based on a tested methodology, wherein the correlations of variables of arbitrary type and spatial resolution, both biotic and abiotic, discrete and continuous, may be explored from both niche and network perspectives. In distinction to other modeling systems, SPECIES is a full stack exploratory tool that integrates the three basic components: data (which is incrementally growing), a statistical modeling and analysis engine, and an interactive visualization front end. Combined, these components provide a powerful tool that may guide ecologists toward new insights. SPECIES is optimized to support fast hypothesis prototyping and testing, analyzing thousands of biotic and abiotic variables, and presenting descriptive results to the user at different levels of detail. SPECIES is an open‐access platform available online (http://species.conabio.gob.mx), that is, powerful, flexible, and easy to use. It allows for the exploration and incorporation of ecological data and its subsequent integration into predictive models for both potential ecological niche and geographic distribution. It also provides an ecosystemic, network‐based analysis that may guide the researcher in identifying relations between different biota, such as the relation between disease vectors and potential disease hosts.
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spelling pubmed-63923782019-03-07 SPECIES: A platform for the exploration of ecological data Stephens, Christopher R. Sierra‐Alcocer, Raúl González‐Salazar, Constantino Barrios, Juan M. Salazar Carrillo, Juan Carlos Robredo Ezquivelzeta, Everardo del Callejo Canal, Enrique Ecol Evol Original Research The modeling of ecological data that include both abiotic and biotic factors is fundamental to our understanding of ecosystems. Repositories of biodiversity data, such as GBIF, iDigBio, Atlas of Living Australia, and SNIB (Mexico's National System of Biodiversity Information), contain a great deal of information that can lead to knowledge discovery about ecosystems. However, there is a lack of tools with which to efficiently extract such knowledge. In this paper, we present SPECIES, an open, web‐based platform designed to extract implicit information contained in large scale sets of ecological data. SPECIES is based on a tested methodology, wherein the correlations of variables of arbitrary type and spatial resolution, both biotic and abiotic, discrete and continuous, may be explored from both niche and network perspectives. In distinction to other modeling systems, SPECIES is a full stack exploratory tool that integrates the three basic components: data (which is incrementally growing), a statistical modeling and analysis engine, and an interactive visualization front end. Combined, these components provide a powerful tool that may guide ecologists toward new insights. SPECIES is optimized to support fast hypothesis prototyping and testing, analyzing thousands of biotic and abiotic variables, and presenting descriptive results to the user at different levels of detail. SPECIES is an open‐access platform available online (http://species.conabio.gob.mx), that is, powerful, flexible, and easy to use. It allows for the exploration and incorporation of ecological data and its subsequent integration into predictive models for both potential ecological niche and geographic distribution. It also provides an ecosystemic, network‐based analysis that may guide the researcher in identifying relations between different biota, such as the relation between disease vectors and potential disease hosts. John Wiley and Sons Inc. 2019-01-28 /pmc/articles/PMC6392378/ /pubmed/30847061 http://dx.doi.org/10.1002/ece3.4800 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Stephens, Christopher R.
Sierra‐Alcocer, Raúl
González‐Salazar, Constantino
Barrios, Juan M.
Salazar Carrillo, Juan Carlos
Robredo Ezquivelzeta, Everardo
del Callejo Canal, Enrique
SPECIES: A platform for the exploration of ecological data
title SPECIES: A platform for the exploration of ecological data
title_full SPECIES: A platform for the exploration of ecological data
title_fullStr SPECIES: A platform for the exploration of ecological data
title_full_unstemmed SPECIES: A platform for the exploration of ecological data
title_short SPECIES: A platform for the exploration of ecological data
title_sort species: a platform for the exploration of ecological data
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392378/
https://www.ncbi.nlm.nih.gov/pubmed/30847061
http://dx.doi.org/10.1002/ece3.4800
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