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Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction

Modeling plant growth using functional traits is important for understanding the mechanisms that underpin growth and for predicting new situations. We use three data sets on plant height over time and two validation methods—in‐sample model fit and leave‐one‐species‐out cross‐validation—to evaluate n...

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Autores principales: Thomas, Freya M., Yen, Jian D. L., Vesk, Peter A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392493/
https://www.ncbi.nlm.nih.gov/pubmed/30847055
http://dx.doi.org/10.1002/ece3.4693
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author Thomas, Freya M.
Yen, Jian D. L.
Vesk, Peter A.
author_facet Thomas, Freya M.
Yen, Jian D. L.
Vesk, Peter A.
author_sort Thomas, Freya M.
collection PubMed
description Modeling plant growth using functional traits is important for understanding the mechanisms that underpin growth and for predicting new situations. We use three data sets on plant height over time and two validation methods—in‐sample model fit and leave‐one‐species‐out cross‐validation—to evaluate non‐linear growth model predictive performance based on functional traits. In‐sample measures of model fit differed substantially from out‐of‐sample model predictive performance; the best fitting models were rarely the best predictive models. Careful selection of predictor variables reduced the bias in parameter estimates, and there was no single best model across our three data sets. Testing and comparing multiple model forms is important. We developed an R package with a formula interface for straightforward fitting and validation of hierarchical, non‐linear growth models. Our intent is to encourage thorough testing of multiple growth model forms and an increased emphasis on assessing model fit relative to a model's purpose.
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spelling pubmed-63924932019-03-07 Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction Thomas, Freya M. Yen, Jian D. L. Vesk, Peter A. Ecol Evol Original Research Modeling plant growth using functional traits is important for understanding the mechanisms that underpin growth and for predicting new situations. We use three data sets on plant height over time and two validation methods—in‐sample model fit and leave‐one‐species‐out cross‐validation—to evaluate non‐linear growth model predictive performance based on functional traits. In‐sample measures of model fit differed substantially from out‐of‐sample model predictive performance; the best fitting models were rarely the best predictive models. Careful selection of predictor variables reduced the bias in parameter estimates, and there was no single best model across our three data sets. Testing and comparing multiple model forms is important. We developed an R package with a formula interface for straightforward fitting and validation of hierarchical, non‐linear growth models. Our intent is to encourage thorough testing of multiple growth model forms and an increased emphasis on assessing model fit relative to a model's purpose. John Wiley and Sons Inc. 2019-02-06 /pmc/articles/PMC6392493/ /pubmed/30847055 http://dx.doi.org/10.1002/ece3.4693 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Thomas, Freya M.
Yen, Jian D. L.
Vesk, Peter A.
Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title_full Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title_fullStr Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title_full_unstemmed Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title_short Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
title_sort using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological prediction
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392493/
https://www.ncbi.nlm.nih.gov/pubmed/30847055
http://dx.doi.org/10.1002/ece3.4693
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