Cargando…
Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases
BACKGROUND: Lung adenocarcinoma (LUAD) accounts for approximately 40% of all lung cancer patients. There is an urgent need to understand the mechanisms of cancer progression in LUAD and to identify useful biomarkers to predict prognosis. METHODS: In this study, Oncomine database was used to identify...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393652/ https://www.ncbi.nlm.nih.gov/pubmed/30556321 http://dx.doi.org/10.1002/mgg3.528 |
_version_ | 1783398731834458112 |
---|---|
author | Liu, Wei Ouyang, Songyun Zhou, Zhigang Wang, Meng Wang, Tingting Qi, Yu Zhao, Chunling Chen, Kuisheng Dai, Liping |
author_facet | Liu, Wei Ouyang, Songyun Zhou, Zhigang Wang, Meng Wang, Tingting Qi, Yu Zhao, Chunling Chen, Kuisheng Dai, Liping |
author_sort | Liu, Wei |
collection | PubMed |
description | BACKGROUND: Lung adenocarcinoma (LUAD) accounts for approximately 40% of all lung cancer patients. There is an urgent need to understand the mechanisms of cancer progression in LUAD and to identify useful biomarkers to predict prognosis. METHODS: In this study, Oncomine database was used to identify potential genes contributed to cancer progression. Bioinformatics analysis including pathway enrichment and text mining was used to explain the potential roles of identified genes in LUAD. The Cancer Genome Atlas database was used to analyze the association of gene expression with survival result. RESULTS: Our results indicated that 80 genes were significantly dysregulated in LUAD according to four microarrays covering 356 cases of LUAD and 164 cases of normal lung tissues. Twenty genes were consistently and stably dysregulated by more than twofold. Ten of 20 genes had a relationship with overall survival or disease‐free survival in a cohort of 516 LUAD patients, and 19 genes were associated with tumor stage, gender, age, lymph node, or smoking. Low expression of AGER and high expression of CCNB1 were specifically associated with poor survival. CONCLUSION: Our findings implicate AGER and CCNB1 might be potential biomarkers for diagnosis and prognosis targets for LUAD. |
format | Online Article Text |
id | pubmed-6393652 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63936522019-03-08 Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases Liu, Wei Ouyang, Songyun Zhou, Zhigang Wang, Meng Wang, Tingting Qi, Yu Zhao, Chunling Chen, Kuisheng Dai, Liping Mol Genet Genomic Med Original Articles BACKGROUND: Lung adenocarcinoma (LUAD) accounts for approximately 40% of all lung cancer patients. There is an urgent need to understand the mechanisms of cancer progression in LUAD and to identify useful biomarkers to predict prognosis. METHODS: In this study, Oncomine database was used to identify potential genes contributed to cancer progression. Bioinformatics analysis including pathway enrichment and text mining was used to explain the potential roles of identified genes in LUAD. The Cancer Genome Atlas database was used to analyze the association of gene expression with survival result. RESULTS: Our results indicated that 80 genes were significantly dysregulated in LUAD according to four microarrays covering 356 cases of LUAD and 164 cases of normal lung tissues. Twenty genes were consistently and stably dysregulated by more than twofold. Ten of 20 genes had a relationship with overall survival or disease‐free survival in a cohort of 516 LUAD patients, and 19 genes were associated with tumor stage, gender, age, lymph node, or smoking. Low expression of AGER and high expression of CCNB1 were specifically associated with poor survival. CONCLUSION: Our findings implicate AGER and CCNB1 might be potential biomarkers for diagnosis and prognosis targets for LUAD. John Wiley and Sons Inc. 2018-12-16 /pmc/articles/PMC6393652/ /pubmed/30556321 http://dx.doi.org/10.1002/mgg3.528 Text en © 2018 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Liu, Wei Ouyang, Songyun Zhou, Zhigang Wang, Meng Wang, Tingting Qi, Yu Zhao, Chunling Chen, Kuisheng Dai, Liping Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title | Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title_full | Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title_fullStr | Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title_full_unstemmed | Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title_short | Identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: Analyses based on microarray from Oncomine and The Cancer Genome Atlas databases |
title_sort | identification of genes associated with cancer progression and prognosis in lung adenocarcinoma: analyses based on microarray from oncomine and the cancer genome atlas databases |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393652/ https://www.ncbi.nlm.nih.gov/pubmed/30556321 http://dx.doi.org/10.1002/mgg3.528 |
work_keys_str_mv | AT liuwei identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT ouyangsongyun identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT zhouzhigang identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT wangmeng identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT wangtingting identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT qiyu identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT zhaochunling identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT chenkuisheng identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases AT dailiping identificationofgenesassociatedwithcancerprogressionandprognosisinlungadenocarcinomaanalysesbasedonmicroarrayfromoncomineandthecancergenomeatlasdatabases |