Cargando…

Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production

Cladosporium phlei, which causes purple eyespot disease, has been focused on as a source of phleichrome from the perylenequinone group of pigments. Although this agent is important in photodynamic therapy, there are no genome sequences for the species. Here, we sequenced the genome of C. phlei and r...

Descripción completa

Detalles Bibliográficos
Autores principales: Kang, Yu-Na, So, Kum-Kang, Kim, Do-Wan, Kim, Dae-Hyuk, Lee, Tae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393816/
https://www.ncbi.nlm.nih.gov/pubmed/30833809
http://dx.doi.org/10.1177/1176934319831306
_version_ 1783398762760110080
author Kang, Yu-Na
So, Kum-Kang
Kim, Do-Wan
Kim, Dae-Hyuk
Lee, Tae-Ho
author_facet Kang, Yu-Na
So, Kum-Kang
Kim, Do-Wan
Kim, Dae-Hyuk
Lee, Tae-Ho
author_sort Kang, Yu-Na
collection PubMed
description Cladosporium phlei, which causes purple eyespot disease, has been focused on as a source of phleichrome from the perylenequinone group of pigments. Although this agent is important in photodynamic therapy, there are no genome sequences for the species. Here, we sequenced the genome of C. phlei and reported the draft sequence. The total length of the draft genome was approximately 31.8 Mb, and 9571 genes were predicted. Phylogenetic analysis showed that Cladosporium sphaerospermum, Rachicladosporium sp., and Rachicladosporium antarcticum were closely related, and this result corresponded to the taxonomic data. In addition to the draft genome sequence, we report four candidates of new polyketide synthase (PKS) genes, involved in the production of perylenequinone-group pigments.
format Online
Article
Text
id pubmed-6393816
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher SAGE Publications
record_format MEDLINE/PubMed
spelling pubmed-63938162019-03-04 Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production Kang, Yu-Na So, Kum-Kang Kim, Do-Wan Kim, Dae-Hyuk Lee, Tae-Ho Evol Bioinform Online Short Report Cladosporium phlei, which causes purple eyespot disease, has been focused on as a source of phleichrome from the perylenequinone group of pigments. Although this agent is important in photodynamic therapy, there are no genome sequences for the species. Here, we sequenced the genome of C. phlei and reported the draft sequence. The total length of the draft genome was approximately 31.8 Mb, and 9571 genes were predicted. Phylogenetic analysis showed that Cladosporium sphaerospermum, Rachicladosporium sp., and Rachicladosporium antarcticum were closely related, and this result corresponded to the taxonomic data. In addition to the draft genome sequence, we report four candidates of new polyketide synthase (PKS) genes, involved in the production of perylenequinone-group pigments. SAGE Publications 2019-02-26 /pmc/articles/PMC6393816/ /pubmed/30833809 http://dx.doi.org/10.1177/1176934319831306 Text en © The Author(s) 2019 http://www.creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Short Report
Kang, Yu-Na
So, Kum-Kang
Kim, Do-Wan
Kim, Dae-Hyuk
Lee, Tae-Ho
Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title_full Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title_fullStr Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title_full_unstemmed Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title_short Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production
title_sort draft genome sequencing of the pathogenic fungus cladosporium phlei atcc 36193 identifies candidates of novel polyketide synthase genes involved in perylenequinone-group pigment production
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393816/
https://www.ncbi.nlm.nih.gov/pubmed/30833809
http://dx.doi.org/10.1177/1176934319831306
work_keys_str_mv AT kangyuna draftgenomesequencingofthepathogenicfunguscladosporiumphleiatcc36193identifiescandidatesofnovelpolyketidesynthasegenesinvolvedinperylenequinonegrouppigmentproduction
AT sokumkang draftgenomesequencingofthepathogenicfunguscladosporiumphleiatcc36193identifiescandidatesofnovelpolyketidesynthasegenesinvolvedinperylenequinonegrouppigmentproduction
AT kimdowan draftgenomesequencingofthepathogenicfunguscladosporiumphleiatcc36193identifiescandidatesofnovelpolyketidesynthasegenesinvolvedinperylenequinonegrouppigmentproduction
AT kimdaehyuk draftgenomesequencingofthepathogenicfunguscladosporiumphleiatcc36193identifiescandidatesofnovelpolyketidesynthasegenesinvolvedinperylenequinonegrouppigmentproduction
AT leetaeho draftgenomesequencingofthepathogenicfunguscladosporiumphleiatcc36193identifiescandidatesofnovelpolyketidesynthasegenesinvolvedinperylenequinonegrouppigmentproduction